Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75170 370 / 2e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 366 / 6e-128 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 254 / 7e-84 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G08690 238 / 1e-77 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT3G22410 83 / 7e-18 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G05370 82 / 2e-17 Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G63060 77 / 3e-16 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G01630 77 / 3e-16 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G14820 62 / 3e-11 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT3G51670 59 / 1e-09 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G123200 [exp] 452 / 3e-162 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025800 [exp] 449 / 8e-161 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G261000 [exp] 398 / 9e-141 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G093400 [exp] 256 / 2e-83 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.013G068700 [exp] 252 / 3e-82 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G168100 [exp] 105 / 7e-27 AT4G08690 134 / 4e-38 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.010G088300 [exp] 92 / 6e-21 AT1G05370 520 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.017G063966 [exp] 86 / 3e-19 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G162100 [exp] 81 / 9e-18 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026020 [exp] 413 / 2e-145 AT1G75170 397 / 4e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10014312 [exp] 407 / 3e-144 AT1G75170 397 / 4e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10010804 [exp] 378 / 8e-133 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 371 / 3e-130 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10025128 [exp] 346 / 2e-120 AT1G75170 380 / 3e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10033464 [exp] 250 / 8e-82 AT4G08690 378 / 4e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10020911 [exp] 251 / 1e-81 AT4G08690 376 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023956 [exp] 171 / 2e-52 AT4G36640 166 / 1e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10004684 [exp] 95 / 9e-23 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10016733 [exp] 94 / 2e-22 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [poplar] [flax] CRAL_TRIO PF13716 [poplar] [flax] CRAL_TRIO_2 Divergent CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Potri.007G025900.1 pacid=42765186 polypeptide=Potri.007G025900.1.p locus=Potri.007G025900 ID=Potri.007G025900.1.v4.1 annot-version=v4.1 ATGTATCTTATAAGAAGGCAGCCACATACTCAGCAGGAGAATGACCCTTCAGAACGAGATGCAAAGGTTTGTGAGCTCAGGGCTGCTCTTGGACCTCTAT CTGGTCGTAGTTTACAGTACTGCACTGATTCATGCTTGAGAAGGTATTTGGAAGCTCGGAACTGGAATGTTGACAAGGCAAAGAAAATGCTGGAAGAGAC GATTAAGTGGAGAGCAACTTTCAAGCCTGAAGAAATCCGCTGGCATGAAGTAGCACATGAAGGCGTGACAGGGAAAATCTCCAGAGCAAATTTTCATGAT CGTTCCGGGAGGACTGTGCTTATAATGAGGCCAGGGATGCAGACCACAAAATGTACTGAAGACAATGTCCGCTACATGGTCTATCTTTTAGAAAATGGAA TCCTTAACCTTGCTGATGGTCAAGAACAAATGTCATGGTTGATAGACTTCACTGGATGGTCCTTGAGCACCAATATTCCCATCAAAACTAGCCGTGATTG CATTAATGTTTTGCAAAACCATTATCCCCAAAGGCTGGCCATTGCATTTCTTTATAATCCTCCAAGAATTTTCGAGGCGTTCTGGAAGGCTGTCAGGTAC TTCTTGGATCCAATAACATTCAAGAAGGTGAAGTTTGCTTACCCAAAAAAGAAAGAAAGTTCGGAGCTCATGCAGTCTTACTTTGATATTGAAAATCTTC CAAGTGAATTTGGGGGAAAAGCCTCACTCGAGTATGACCATGAGGAGTTCTCACGGTTGATGGTCGAGGATGACGAAAGAACTGCCAAGTTCTGGGGATC TGATGAAAAGTCGAGAGACAATATTGCTGATCATGACCATTTAGCTCAGATGACACCAGTGCCAGCGCCTCTTGCAATAACAGCTAGCTAA
AA sequence Show only first row Show all	>Potri.007G025900.1 pacid=42765186 polypeptide=Potri.007G025900.1.p locus=Potri.007G025900 ID=Potri.007G025900.1.v4.1 annot-version=v4.1 MYLIRRQPHTQQENDPSERDAKVCELRAALGPLSGRSLQYCTDSCLRRYLEARNWNVDKAKKMLEETIKWRATFKPEEIRWHEVAHEGVTGKISRANFHD RSGRTVLIMRPGMQTTKCTEDNVRYMVYLLENGILNLADGQEQMSWLIDFTGWSLSTNIPIKTSRDCINVLQNHYPQRLAIAFLYNPPRIFEAFWKAVRY FLDPITFKKVKFAYPKKKESSELMQSYFDIENLPSEFGGKASLEYDHEEFSRLMVEDDERTAKFWGSDEKSRDNIADHDHLAQMTPVPAPLAITAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.007G025900 [exp]	0	1
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.007G024400 [exp]	1.00	0.9865
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G053800 [exp]	2.82	0.9666
AT2G48090			unknown protein		Potri.014G137850 [exp]	3.46	0.9635
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Potri.012G136600 [exp]	3.87	0.9627	CYP80D1
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.014G175000 [exp]	4.24	0.9581	Pt-ZOG1.11
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Potri.004G047500 [exp]	6.00	0.9348
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193300 [exp]	6.32	0.9553
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143700 [exp]	6.32	0.9608
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270400 [exp]	6.48	0.9622
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.007G002400 [exp]	6.70	0.9508

Compare expression of checked genes

Potri.007G025900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.