Plant FIBer expression Database

Pt-SDH1.1 (Potri.007G026400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-SDH1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66760 1180 / 0 SDH1-1 succinate dehydrogenase 1-1 (.1)
AT2G18450 1134 / 0 SDH1-2 succinate dehydrogenase 1-2 (.1)
AT5G14760 248 / 4e-73 AO L-aspartate oxidase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G123900
[exp]
1222 / 0 AT5G66760 1136 / 0.0 succinate dehydrogenase 1-1 (.1)
Potri.001G348600
[exp]
248 / 2e-73 AT5G14760 996 / 0.0 L-aspartate oxidase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041739
[exp]
1162 / 0 AT5G66760 1153 / 0.0 succinate dehydrogenase 1-1 (.1)
Lus10024015
[exp]
1114 / 0 AT5G66760 1103 / 0.0 succinate dehydrogenase 1-1 (.1)
Lus10014539
[exp]
243 / 2e-71 AT5G14760 994 / 0.0 L-aspartate oxidase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF00890 FAD_binding_2 FAD binding domain
CL0063 PF02910 Succ_DH_flav_C Fumarate reductase flavoprotein C-term
Representative CDS sequence
>Potri.007G026400.3 pacid=42765295 polypeptide=Potri.007G026400.3.p locus=Potri.007G026400 ID=Potri.007G026400.3.v4.1 annot-version=v4.1
ATGTGGCGGTGCGTGGCTCGTGGCCTTCGCCTTCCTTGTTCAACCAAGAGATCATCTAATGACTCTTTTAGATCTCACATTTCCAGATTTTTCTCCACCG
ATACTACTGGGGGGAGATCCTCGTACACGGTTGTGGATCATACTTATGATGCGGTTGTGGTAGGAGCTGGCGGTGCGGGATTGAGAGCTGCTATTGGACT
TTCAGAGCATGGATTCAACACGGCTTGCATTACCAAGCTTTTTCCCACTCGTTCGCACACCGTTGCGGCTCAGGGTGGTATTAATGCCGCTCTGGGAAAT
ATGACTGAAGATGATTGGAGATGGCACATGTACGACACTGTCAAGGGAAGTGACTGGTTGGGTGATCAGGATGCCATACAATACATGTGTAGGGAGGCGC
CAAAAGCAGTCATTGAACTTGAGAACTATGGTTTACCATTTTCTCGAACAGAAGATGGAAAAATTTATCAGCGTGCATTTGGGGGTCAAAGTCTAGATTT
TGGAAAAGGTGGGCAGGCATATCGTTGTGCATGTGCTGCTGATAGAACTGGGCATGCTCTTTTGCATACTCTCTATGGCCAGGCTATGAAACACAATACA
CAATTCTTCGTGGAATATTTTGCTCTGGATCTAATAATGAATAATGACGGTAGCTGCCAAGGAGTAATTGCATTGAATATGGAAGATGGGACATTGCATC
GATTCCGTGCTGCGTCAACAATTCTGGCCACAGGGGGATACGGTAGAACATACTTTTCTGCAACCTCAGCTCATACATGCACTGGAGATGGAAATGCAAT
GGTTGCACGGGCCGGGATTCCACTTGAGGATCTGGAGTTTGTTCAGTTTCATCCTACAGGCATATATGGGGCTGGGTGCCTCATTACAGAAGGATCTCGT
GGTGAAGGTGGCATCCTTAGGAATAGTGAAGGTGAGCGATTTATGGAAAGGTATGCACCTACAGCCAAGGATCTTGCTTCAAGAGATGTTGTTTCAAGAT
CCATGACCATGGAAATTCGGGAAGGTCGCGGTGTAGGACCTTTGAAGGACCATATCTATCTGCACTTGAATCACTTGCCCCCAGATGTGCTCAAGGAGAG
GCTTCCTGGTATTTCTGAAACTGCTGCCATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATCCCAGTGTTACCAACTGTGCATTATAACATGGGTGGA
ATCCCCACAAATTACCATGGAGAGGTAGTAACCATTAAAGGTGATGATCCAGATGCTGTTATTCCTGGACTAATGGCTGCTGGTGAGGCAGCCTGTGCTT
CAGTTCATGGTGCCAACCGACTTGGTGCAAATTCTCTTCTTGACATTGTTGTGTTTGGCCGAGCTTGTGCAAATAGAGTAGCTGAGATCCATAGACCAGG
GGAGAAACAGAAACCTTTGGAAAAGGATGCTGGGGAGAGAACTATTGCACGGCTGGATAAACTAAGAAATTCAAATGGATCAATTCCAACTTCACAAATT
CGGTTAAATATGCAGAGGATAATGCAGAGCAATGCTGCAGTGTTTCGCACGCAAGAAACATTGGAAGAGGGTTGTCATTTGATTGATAAAGCATGGGAAA
GCTTTCATGATGTTAAAGTGAAAGATCGGAGTTTAATATGGAACTCTGACTTGATCGAGACTGTAGAGTTGGAAAACCTTTTGATAAATGCCTGTATAAC
TATGCACTCTGCTGAAGCCAGGAAAGAGAGCAGAGGAGCACATGCCCGTGAAGACTTCACTAAAAGAGATGATGAGAAATGGATGAAGCACACTCTGGGG
TATTGGGAGAAGGAGAAGGTCCGACTTGATTACAGGCCAGTTCACATGAACACATTGGATGATGAGGTTGAGACCTTCCCACCAAAGGCTCGTGTTTATT
GA
AA sequence
>Potri.007G026400.3 pacid=42765295 polypeptide=Potri.007G026400.3.p locus=Potri.007G026400 ID=Potri.007G026400.3.v4.1 annot-version=v4.1
MWRCVARGLRLPCSTKRSSNDSFRSHISRFFSTDTTGGRSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN
MTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNT
QFFVEYFALDLIMNNDGSCQGVIALNMEDGTLHRFRAASTILATGGYGRTYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSR
GEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGG
IPTNYHGEVVTIKGDDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIHRPGEKQKPLEKDAGERTIARLDKLRNSNGSIPTSQI
RLNMQRIMQSNAAVFRTQETLEEGCHLIDKAWESFHDVKVKDRSLIWNSDLIETVELENLLINACITMHSAEARKESRGAHAREDFTKRDDEKWMKHTLG
YWEKEKVRLDYRPVHMNTLDDEVETFPPKARVY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G66760 SDH1-1 succinate dehydrogenase 1-1 (.... Potri.007G026400
[exp]
0 1 Pt-SDH1.1
AT5G15860 ICME, ATPCME Isoprenylcysteine methylestera... Potri.017G110700
[exp]
1.41 0.7927
AT2G38710 AMMECR1 family (.1.2) Potri.010G240000
[exp]
3.16 0.7407
AT2G16460 Protein of unknown function (D... Potri.009G123700
[exp]
3.87 0.7543
Potri.003G152900
[exp]
5.19 0.8026
AT1G53820 RING/U-box superfamily protein... Potri.003G073300
[exp]
7.21 0.7345
AT5G23395 MIA40 mitochondrial intermembrane sp... Potri.010G254600
[exp]
10.95 0.7146
AT2G30970 ASP1 aspartate aminotransferase 1 (... Potri.014G143300
[exp]
12.72 0.7482
Potri.011G164150
[exp]
18.97 0.6925
AT5G13420 Aldolase-type TIM barrel famil... Potri.001G068200
[exp]
23.45 0.7159
AT5G04430 BTR1S, BTR1L, B... BINDING TO TOMV RNA 1S \(SHORT... Potri.008G030700
[exp]
27.54 0.6629

Potri.007G026400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.