Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50660 758 / 0 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT5G05690 358 / 2e-119 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT1G73340 322 / 1e-104 Cytochrome P450 superfamily protein (.1) AT4G36380 321 / 3e-104 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G13730 315 / 2e-102 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT1G12740 306 / 3e-99 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT3G30180 283 / 4e-90 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G38970 280 / 3e-89 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT5G14400 276 / 5e-89 CYP724A1 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) AT1G55940 256 / 6e-78 CYP708A1 "cytochrome P450, family 708, subfamily A, polypeptide 1", cytochrome P450, family 708, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G124000 [exp] 880 / 0 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.014G171700 [exp] 429 / 7e-147 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.001G341000 [exp] 416 / 5e-142 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Potri.008G067500 [exp] 375 / 7e-126 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.010G189800 [exp] 375 / 7e-126 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.007G018400 [exp] 337 / 1e-110 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.017G154600 [exp] 327 / 5e-107 AT1G73340 714 / 0.0 Cytochrome P450 superfamily protein (.1) Potri.001G200100 [exp] 323 / 2e-105 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G038200 [exp] 316 / 9e-103 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024016 [exp] 679 / 0 AT3G50660 643 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10041737 [exp] 507 / 7e-180 AT3G50660 481 / 9e-170 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10016065 [exp] 411 / 2e-139 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10003650 [exp] 360 / 5e-120 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10040193 [exp] 353 / 5e-117 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 339 / 9e-112 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10031295 [exp] 316 / 2e-102 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10031866 [exp] 313 / 2e-101 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10028345 [exp] 313 / 3e-101 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10024495 [exp] 305 / 1e-98 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.007G026500.1 pacid=42765650 polypeptide=Potri.007G026500.1.p locus=Potri.007G026500 ID=Potri.007G026500.1.v4.1 annot-version=v4.1 ATGTCTCACTCAGAGCTTGTTGTCTTTCTCCTTCCATCGATTTTATCACTACTCTTGCTCTTCATTCTCGTGCAAAGAAAGCAAGTAAGATTTAATCTCC CACCAGGCAACATGGGGTGGCCATTTCTTGGAGAAACCATTGGCTACCTGAAGCCTTACTCTGCTACTTCAATAGGAGAATTCATGGAACAGCACATATC AAGGTATGGAAAGATTTACAAGTCCAATTTGTTTGGGGAGCCAACAATAGTATCCGCAGATGCTGGACTTAACAGATTTATACTACAGAATGAGGGAAGA TTATTTGAATGCAGCTATCCAAAAAGTATTGGTGGAATTCTTGGAAAATGGTCCATGTTGGTTCTTGTTGGAGACATGCATAGAGACATGAGGATTATAT CTCTTAACTTTTTGAGCCATGCCAGGTTAAGAACTCATCTATTGAAAGAAGTGGAGAAGCAAACCCTGCTTGTTCTTAGCTCTTGGAAGGAGAATTGTAC ATTTTCAGCTCAAGATGAAGCAAAGAAGTTTACCTTCAATTTGATGGCAAAACATATCATGAGCTTGGATCCTGGAAAGCCAGAGACTGAGCAGCTGAAA AAAGAGTATGTTACTTTCATGAAAGGAGTAGTTTCAGCTCCTATAAATTTGCCTGGAACCCCATATAGAAAAGCCTTGAAGTCTCGATCAATCATCTTGA AATTTATAGAGCGAAAGATGGAGGAGAGAATTGCTGAAACGAAGGGTGGAGTAGAAAACTTGGAAGACGATGATCTTCTTGGATGGGTCTTGAAGCATTC AAATCTTTCTACGGAGCAAATCCTTGACTTAATCTTAAGCTTGCTCTTTGCTGGCCACGAAACTTCTTCTGTGTCCATAGCTCTAGCCATCTACTTCTTG CAAGCTTGTCCTGGTGCTATTCAACAGTTAAAAGAAGAACATATTCAAATCTCCAGAGCCAAGAAACGGTCAGGAGAGACGGAATTGAACTGGGATGATT ACAAAAAAATGGAATTCACCCAATGCGTTATAAGCGAGACACTGAGGCTTGGAAACGTAGTCAGGTTTCTTCACAGAAAAGCTCTAAAAGATGTTCGGTA CAAAGGGTACGACATTCCATGTGGATGGAAAGTGCTACCAGTGATCTCAGCCGTCCATTTAGATTCAACTCTTTTCGACCAACCTCAACACTTCAATCCA TGGAGATGGCAGCATAACAATGCTCGTGGTGCTTCTACAAGTTCGAGTGGGACGACGAGTAGTAATTACTTCATGCCATTTGGGGGAGGACCGCGACTTT GTGCAGGATCGGAATTGGCAAAACTAGAAATGGCCGTGTTCATCCACCATTTGGTCCTCAACTTCCACTGGGAACTGGTTGATACCGATCAAGCCTTTGC CTTTCCTTTTGTCGATTTTCCCAAGGGCTTGCCCATAAGAGTCAAGCACCTACTCACAGTTACATGA
AA sequence Show only first row Show all	>Potri.007G026500.1 pacid=42765650 polypeptide=Potri.007G026500.1.p locus=Potri.007G026500 ID=Potri.007G026500.1.v4.1 annot-version=v4.1 MSHSELVVFLLPSILSLLLLFILVQRKQVRFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYKSNLFGEPTIVSADAGLNRFILQNEGR LFECSYPKSIGGILGKWSMLVLVGDMHRDMRIISLNFLSHARLRTHLLKEVEKQTLLVLSSWKENCTFSAQDEAKKFTFNLMAKHIMSLDPGKPETEQLK KEYVTFMKGVVSAPINLPGTPYRKALKSRSIILKFIERKMEERIAETKGGVENLEDDDLLGWVLKHSNLSTEQILDLILSLLFAGHETSSVSIALAIYFL QACPGAIQQLKEEHIQISRAKKRSGETELNWDDYKKMEFTQCVISETLRLGNVVRFLHRKALKDVRYKGYDIPCGWKVLPVISAVHLDSTLFDQPQHFNP WRWQHNNARGASTSSSGTTSSNYFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFHWELVDTDQAFAFPFVDFPKGLPIRVKHLLTVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Potri.007G026500 [exp]	0	1
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.003G145500 [exp]	6.16	0.8655
AT1G01980		ATSEC1A	FAD-binding Berberine family p...		Potri.001G462600 [exp]	12.00	0.8042
AT4G01970		RS4, ATSTS	raffinose synthase 4, stachyos...		Potri.014G118400 [exp]	14.83	0.8306
AT5G58660			2-oxoglutarate (2OG) and Fe(II...		Potri.001G278200 [exp]	14.89	0.8624
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.007G003100 [exp]	16.34	0.8621
AT5G67370			Protein of unknown function (D...		Potri.007G052500 [exp]	29.59	0.8229
AT1G72690			unknown protein		Potri.017G119600 [exp]	36.00	0.8012
AT5G09300			Thiamin diphosphate-binding fo...		Potri.005G064000 [exp]	36.33	0.8148
AT2G22590			UDP-Glycosyltransferase superf...		Potri.014G088400 [exp]	39.76	0.7970
AT3G62700		ATMRP10, ABCC14	ATP-binding cassette C14, mult...		Potri.002G205500 [exp]	44.44	0.8008	MRP4.1

Compare expression of checked genes

Potri.007G026500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.