Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25737 435 / 2e-149 Sulfite exporter TauE/SafE family protein (.1) AT2G36630 285 / 3e-91 Sulfite exporter TauE/SafE family protein (.1) AT1G11540 113 / 1e-27 Sulfite exporter TauE/SafE family protein (.1) AT1G61740 102 / 3e-23 Sulfite exporter TauE/SafE family protein (.1) AT4G21250 92 / 6e-20 Sulfite exporter TauE/SafE family protein (.1) AT4G21260 72 / 1e-13 Sulfite exporter TauE/SafE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G124200 [exp] 715 / 0 AT2G25737 453 / 1e-156 Sulfite exporter TauE/SafE family protein (.1) Potri.006G242100 [exp] 459 / 6e-159 AT2G25737 568 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.003G053000 [exp] 442 / 4e-152 AT2G25737 501 / 2e-175 Sulfite exporter TauE/SafE family protein (.1) Potri.018G037400 [exp] 440 / 1e-151 AT2G25737 535 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.018G037500 [exp] 431 / 5e-148 AT2G25737 529 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.001G183400 [exp] 388 / 4e-131 AT2G25737 418 / 5e-143 Sulfite exporter TauE/SafE family protein (.1) Potri.001G183300 [exp] 382 / 1e-128 AT2G25737 381 / 2e-128 Sulfite exporter TauE/SafE family protein (.1) Potri.001G182700 [exp] 381 / 2e-128 AT2G25737 428 / 6e-147 Sulfite exporter TauE/SafE family protein (.1) Potri.006G117900 [exp] 283 / 2e-90 AT2G36630 578 / 0.0 Sulfite exporter TauE/SafE family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026025 [exp] 534 / 0 AT2G25737 533 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10014316 [exp] 517 / 0 AT2G25737 536 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10011682 [exp] 457 / 4e-158 AT2G25737 632 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10011683 [exp] 305 / 4e-99 AT2G25737 444 / 9e-154 Sulfite exporter TauE/SafE family protein (.1) Lus10020733 [exp] 269 / 4e-85 AT2G36630 611 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10029813 [exp] 268 / 2e-84 AT2G36630 612 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10022134 [exp] 92 / 6e-21 AT2G25737 168 / 8e-50 Sulfite exporter TauE/SafE family protein (.1) Lus10022133 [exp] 82 / 4e-19 AT2G25737 106 / 2e-28 Sulfite exporter TauE/SafE family protein (.1) Lus10020068 [exp] 84 / 4e-17 AT1G61740 371 / 2e-125 Sulfite exporter TauE/SafE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [poplar] [flax] LysE PF01925 [poplar] [flax] TauE Sulfite exporter TauE/SafE
Representative CDS sequence Show only first row Show all	>Potri.007G026800.1 pacid=42766792 polypeptide=Potri.007G026800.1.p locus=Potri.007G026800 ID=Potri.007G026800.1.v4.1 annot-version=v4.1 ATGGCTAGAATTATGGTGAGCCAGAGAGCTTTAGCAACAACAGCAGTGCTAACATGTTTGATATTTCTGGTTCAAGTCTTAATGACCAACATGGCCAGCG CAGAGAGACTGCTGAAAGATAAAGAAGCAGAAACCTTGGTTAAGAAAGAAATGAGCCCTGGCTATATAGTAAAAATGATTCATTTTTTATTTCAGGGTGG GAAGTCTTCTTATGAGCCTGTTTGGCCTGACATGAAGTTTGATTGGAGAGTTGTGGTAGGAACAATAGTAGGATTCTTTGGGGCAGCTCTGGGTAGCGTT GGAGGAGTTGGAGGCGGTGGAATTTTTGTACCGATGCTCACCTTGATCATCGGTTTCGATCCGAAATCTTCCACTGCCATTTCCAAGTGTATGATTATGG GTGCAGCAGGAGCAACTGTATATTACAACCTGAGACTTAGGCACCCAACACTGGACATGCCCATAATAGACTATGACCTGGCTTTGCTCTTTCAGCCTAT GCTCATGCTTGGAATCAGCATTGGAGTTGCCTTCAATGTCATGTTTGCTGATTGGATGGTTACCGTTCTGCTTATTATCCTCTTCATAGGTACTTCTACT AAAGCTTTATTCAAAGGGATAGATACATGGAAGAAAGAGAGTGTGATGAAAAAGGAAGCAGCCAAGCAGCTAGAATCAGAGTCCAAACCAGGAGACGGTG CTGAAGAAGAATACCAGCCACTTCCAAGTGGTCCAGTTGTTCTACATGACGATGAGGTACCTCTACGGGAAAACATTCGCTGGAAAGAGTTAGCTCTGCT TGTCTATGTCTGGGTGGCCTTTCTTGTTGTTCAAATTGTTCAGACAAATGTTCCAACCTGCTCAGTCATGTACTGGATCCTGAACTCATTGCAGGTACCA ATTGCTGCCTCAGTTACGCTTTTCGAAGCCATATGCTTGTGCAAGGGGACCAGAGTGATAGCATCCAAAGGGAAGGAAATCACAAATTGGAAGTTACACC AGGTTCTACTCTACTGTTCATGTGGAATAATAGCTGGAATAGTAGGTGGACTGCTTGGGCTAGGAGGCGGCTTCATCTTGGGACCTCTTTTCCTTGAATT AGGAATTCCTCCTCAGGTAGCAAGTGCAACATCAACTTTTGCAATGGCATTCTCATCTTCAATGTCAGTAGTAGAGTATTACCTCCTCAATCGTTTCCCG GTCCCATATGCTGCTTACTTTGTTTTAGTTGCAACAATTGCTGCCTTTGCTGGTCAGCATGTGATCAGAAGGATAATTGCAATTCTTGGAAGAGCATCAA TAATCATCTTCATACTGGCTTTGACAATTTTTGTGAGCGCAATCAGCCTAGGTGGAGTTGGCATTGCAAACATGGTTGAGAAGCTGGAGAATGACGAGTA CATGGGGTTTGAAAATCTTTGCTATCAATCTTAG
AA sequence Show only first row Show all	>Potri.007G026800.1 pacid=42766792 polypeptide=Potri.007G026800.1.p locus=Potri.007G026800 ID=Potri.007G026800.1.v4.1 annot-version=v4.1 MARIMVSQRALATTAVLTCLIFLVQVLMTNMASAERLLKDKEAETLVKKEMSPGYIVKMIHFLFQGGKSSYEPVWPDMKFDWRVVVGTIVGFFGAALGSV GGVGGGGIFVPMLTLIIGFDPKSSTAISKCMIMGAAGATVYYNLRLRHPTLDMPIIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTST KALFKGIDTWKKESVMKKEAAKQLESESKPGDGAEEEYQPLPSGPVVLHDDEVPLRENIRWKELALLVYVWVAFLVVQIVQTNVPTCSVMYWILNSLQVP IAASVTLFEAICLCKGTRVIASKGKEITNWKLHQVLLYCSCGIIAGIVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMAFSSSMSVVEYYLLNRFP VPYAAYFVLVATIAAFAGQHVIRRIIAILGRASIIIFILALTIFVSAISLGGVGIANMVEKLENDEYMGFENLCYQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.007G026800 [exp]	0	1
AT5G27730			Protein of unknown function (D...		Potri.005G025200 [exp]	3.31	0.8456
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.017G010300 [exp]	5.29	0.8349
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.001G251200 [exp]	6.48	0.8282
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Potri.007G015100 [exp]	7.48	0.8071
AT2G16980			Major facilitator superfamily ...		Potri.005G245900 [exp]	7.48	0.7891
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.005G117000 [exp]	11.48	0.7634
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Potri.017G089900 [exp]	12.00	0.7743
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.009G045800 [exp]	12.00	0.7860
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.005G124200 [exp]	12.24	0.7902
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.010G127400 [exp]	14.28	0.7425

Compare expression of checked genes

Potri.007G026800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.