Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50670 323 / 5e-106 U1SNRNP, U1-70K U1 small nuclear ribonucleoprotein-70K (.1.2) AT2G43370 96 / 2e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G46020 64 / 2e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G20930 67 / 5e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G73530 62 / 5e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 60 / 7e-11 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT2G27330 57 / 6e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G20030 55 / 6e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G26420 57 / 7e-09 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT3G10400 57 / 7e-09 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G124300 [exp] 369 / 2e-123 AT3G50670 357 / 8e-120 U1 small nuclear ribonucleoprotein-70K (.1.2) Potri.017G033400 [exp] 95 / 4e-21 AT2G43370 341 / 8e-117 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022200 [exp] 69 / 2e-12 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022280 [exp] 65 / 2e-12 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G237200 [exp] 67 / 1e-11 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 64 / 1e-11 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G061600 [exp] 61 / 2e-10 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.001G207100 [exp] 58 / 2e-09 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.015G057400 [exp] 58 / 2e-09 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026026 [exp] 346 / 2e-114 AT3G50670 470 / 4e-164 U1 small nuclear ribonucleoprotein-70K (.1.2) Lus10014317 [exp] 344 / 9e-114 AT3G50670 466 / 2e-162 U1 small nuclear ribonucleoprotein-70K (.1.2) Lus10025557 [exp] 97 / 8e-22 AT2G43370 345 / 1e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10027015 [exp] 97 / 9e-22 AT2G43370 347 / 3e-119 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10027035 [exp] 66 / 3e-11 AT3G20930 360 / 8e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014802 [exp] 62 / 3e-10 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003593 [exp] 61 / 5e-10 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10040854 [exp] 57 / 6e-10 AT3G46020 112 / 1e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10029426 [exp] 61 / 1e-09 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10023723 [exp] 60 / 2e-09 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] RRM PF12220 [poplar] [flax] U1snRNP70_N U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
Representative CDS sequence Show only first row Show all	>Potri.007G026900.1 pacid=42764987 polypeptide=Potri.007G026900.1.p locus=Potri.007G026900 ID=Potri.007G026900.1.v4.1 annot-version=v4.1 ATGGGAGATTACAACGATGCCTTCATGCGCAACCCGAACGCCGCCGTTCGTGGCAGCGCTAAAGGACAGAACCGTGCCAACGTTCTCCAGCTCAAACTGA TTGGGCAAAGTCACCCGACGGGTTTAACAGCAAATCTTTTGAAGCTCTTTGAGCCTCGACCTCCTCTGGAATTTAAACCCCCACCTGAGAAGAGAAAATG CCCGCCATATTTAGGTATGGCTCAGTTTGTGAGTCACTTTGCGGAGCCTGGAGATCCGGAGTATGCTCCTCCTATCAAGGAAGCTGAAACTCCTGCAGAA AGAAAGGCTAGGATTCATGCGGCACGACTAGAGAAGGGTGCAGAAAAGGCTGCCGAGGAGCTCCAAAAATATGATCCTACTAACGATCCAAATGTGTCGG GAGATCCATACAAGACATTGTTCGTTGCTAGGCTTAGTTATGAGACTACCGAGAGTAGAATTAAAAGGGAGTTTGAATCTTATGGACCAATAAAACGGGT TCGCATGGTAGCTGATAAAGTGACAAATAAACCTAGAGGATATGCTTTCATCGAATACATGCATACACGAGACATGAAAGGTGCCTATAAGCAAGCTGAT GGGCGGAAGCTTGATGGAAGAAGGGTACTAGTCGATGTTGAACGAGGTAGGACTGTCCCAAATTGGCGACCTCGCAGACTTGGTGGTGGACTTGGAACTA CCAGAGTTGGGGGTGAAGAAGTTAATCAGAAGCATTCTGGGAGAGAGGTTCAGCAATCAGGAGGATCCTCTCGGTCTGAGGAGCCAAGGACACGAGAAGA TCGGCAAACTGAACGGGACAGGGAAGTGTCTCGTGAAAGGGGAAGGGACAAGGAAAGAGACAGGGAGAAGTCACGTGAGCGCTCCCATGACAAGCCACGG GATCGTGACCACAGAGAAGATAGGCATCATAGAGATCGTGAAAGAGAGAGAGACCGAGACAAGGAGAGAGAACGAGGCCGTGATCGTGACCGTGATAGGA CACGTGATCGAGGTCGGGACCGTGGTCGGGACTATGAGCGTGATCGAGAGAGAGACCGTGGTCGGGATCGTGATCGCACTCGGGACAGGGAGAGGGATTA TGAAGTCAGTGACCCTGACCGTGGGCGTTCCCATGATAGGGATGAGTCAAAACATGAGAGGGATCGACTCGGTGAAAGGGACTATGATCATGCTGAGCCA GAGGATGATCGTGGCTGGTATGAACAACCTGAGCAGGGGCAAAGGCTGCCAGATGCAGAAAATGACCCGCGTTATGATCACTATGAGCATCATAGAAGCA GGGGACCATACGATCCCATGGATGTTCAAGGTGACCAGGACCGCTATGATCAATATCCAGACCGTGATCATGATCGGTATGATCAAATGGAGGATGATGA TTACCACTATGATCGTGGAACATCCGAGTCACGTGAAAAGGAGCGTGAATATAGAAGATCAGAGAGGTCAGTTTCCCGGGATTATGACAACTGA
AA sequence Show only first row Show all	>Potri.007G026900.1 pacid=42764987 polypeptide=Potri.007G026900.1.p locus=Potri.007G026900 ID=Potri.007G026900.1.v4.1 annot-version=v4.1 MGDYNDAFMRNPNAAVRGSAKGQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKPPPEKRKCPPYLGMAQFVSHFAEPGDPEYAPPIKEAETPAE RKARIHAARLEKGAEKAAEELQKYDPTNDPNVSGDPYKTLFVARLSYETTESRIKREFESYGPIKRVRMVADKVTNKPRGYAFIEYMHTRDMKGAYKQAD GRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQKHSGREVQQSGGSSRSEEPRTREDRQTERDREVSRERGRDKERDREKSRERSHDKPR DRDHREDRHHRDRERERDRDKERERGRDRDRDRTRDRGRDRGRDYERDRERDRGRDRDRTRDRERDYEVSDPDRGRSHDRDESKHERDRLGERDYDHAEP EDDRGWYEQPEQGQRLPDAENDPRYDHYEHHRSRGPYDPMDVQGDQDRYDQYPDRDHDRYDQMEDDDYHYDRGTSESREKEREYRRSERSVSRDYDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Potri.007G026900 [exp]	0	1
AT5G27860			unknown protein		Potri.005G023000 [exp]	1.73	0.8266
AT1G52500		ATMMH-2, ATMMH-...	FORMAMIDOPYRIMIDINE-DNA GLYCOS...		Potri.003G031100 [exp]	6.32	0.7542
AT1G60200			splicing factor PWI domain-con...		Potri.010G094700 [exp]	8.48	0.7967
AT5G65960			GTP binding (.1)		Potri.007G064500 [exp]	8.83	0.7454
AT1G10890			unknown protein		Potri.001G211000 [exp]	9.74	0.7669
AT2G22720			SPT2 chromatin protein (.1.2.3...		Potri.005G148700 [exp]	12.40	0.7602
AT3G29390		RIK	RS2-interacting KH protein (.1...		Potri.017G093600 [exp]	12.84	0.7475
AT4G28760			Protein of unknown function (D...		Potri.014G194600 [exp]	17.43	0.7323
AT4G11560			bromo-adjacent homology (BAH) ...		Potri.001G104300 [exp]	18.33	0.7465
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.008G025800 [exp]	21.81	0.7095

Compare expression of checked genes

Potri.007G026900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.