Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18470 598 / 0 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT4G34440 583 / 0 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT3G24550 533 / 0 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G18810 524 / 1e-178 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT1G49270 518 / 1e-176 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT1G52290 488 / 1e-167 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24540 449 / 3e-152 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G70460 446 / 4e-148 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 446 / 6e-148 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT5G38560 427 / 4e-141 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G124400 [exp] 808 / 0 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.018G081300 [exp] 552 / 0 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G153600 [exp] 548 / 0 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 535 / 0 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.001G183000 [exp] 488 / 1e-166 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.003G053301 [exp] 472 / 3e-160 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 451 / 7e-150 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.006G242800 [exp] 447 / 3e-148 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.017G110400 [exp] 431 / 2e-142 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024020 [exp] 582 / 0 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10041734 [exp] 560 / 0 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014318 [exp] 553 / 0 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10011098 [exp] 552 / 0 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 543 / 0 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 535 / 0 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10040467 [exp] 493 / 1e-168 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10026335 [exp] 486 / 2e-167 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10042327 [exp] 486 / 2e-164 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10014319 [exp] 462 / 2e-158 AT3G24550 456 / 3e-156 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.007G027000.1 pacid=42766747 polypeptide=Potri.007G027000.1.p locus=Potri.007G027000 ID=Potri.007G027000.1.v4.1 annot-version=v4.1 ATGTCTTCAACCCCTGATGCTCCCTCGCCAGATTCTGGCTCCCCCCCTCCTCCACCAGCGTCACCACCACCTGAGAATTCAACATCTGCACCCCCACCTC AATCGGATACTCCACCACCAGATACATCATCTCCTCCTCCACCATCTCCACCACCTCCACCAGCGTCACCACCACCTGAGAATTCAACATCTGCACCCCC ACCTCAATCGGATACTCCACCACCAGATACATCATCTCCTCCTCCACCATCTCCACCACCTCCACCGCCAACTAGTGATTCTCGTTCTCCACCATCTCCA CCCCCTCCTAAACACAGAGAAGATGCTTCGCCACCTCCTCCACCCCCTCCTAAACACAGAGAAGATGCTTCGCCACCTCCTCCACCAAGTTCAGAAAACT CACAACCAGCACCTCCAGATTCATCAAATAATGGTGGAGGACTTACTTCAGATCAGATTAAAATTGTAGTTGGCGTGGCAGTTGGTTTCGGTATATTCCT TATTGCCTTGATTTTCATCTGTGCATACTGTTCGCGCAAGAAGAAAAGAAAAAATAGGCATTATTATGGAGAAAATCCTCAAGGAGGGAGTGAACAATTT TCTTATAACTACAGCGCACAGCAATCAAACTGGCAAAATGGTCCCCCAAAAGAACATGTTGTGAAGCTATCCCAATCACCAGGTGCAATGGGGTCTCCCT GGCTTGCACAACCTCCAACTCCACCGATGGGGAACAGTGATGATATGAGCTCCATTAATTCTGGCCCATACCGCCCCCCCTTGCCGCCTCCGCCACCAAA TATTGCTCTTGGTTTCAACAAAAGTACCTTCACATATGATGAACTAGCAGCAGCTACAGGTGGATTTGATCAAGCCAATTTATTAGGTCAAGGTGGGTTC GGTTATGTGCACAAAGGTGTGTTGCCTAATGGGAAGGAGATTGCAGTTAAGAGCTTAAAGGCAGGTACTGGACAGGGTGAACGAGAATTCCAGGCTGAAG TTGATATCATTAGTCGTGTCCATCATCGCCATCTTGTATCACTTGTTGGTTATTGTATTGCTGGAGGGCAAAGAATGTTGGTCTATGAGTTTGTTCCCAA CAAGACCTTGGAACATCACCTTCATGGAAAAGGTCTTCCAGTCATGGAGTGGCCGACTAGGCTCCGTATTGCATTAGGTTCTGCCAAAGGGCTTGCTTAC CTTCATGAAGATTGCCATCCTCGGATTATCCACCGTGATATTAAAGCTGCTAATATTCTTATTGACAACAACTTCGAAGCCATGGTTGCTGATTTCGGAT TGGCTAAGCTGTCTTCTGACAATTATACGCACGTATCTACCCGTGTCATGGGTACTTTCGGGTATTTGGCTCCTGAGTATGCAGCAAGCGGCAAGCTGAC TGAGAAATCTGATGTTTTCTCGTATGGAGTCATGCTCTTGGAACTCATAACTGGGAAGAAACCTGTTGATCCTTCAAGTGCAATGGAAGATAGCTTGGTG GACTGGGCTCGACCACTTACGATTTCTGCTTTGGAGACTGGCAACTTCATTGAGTTGGTCGATCCAATGTTGGAGAGCAAGTACAACCATCAAGAGATGC AAAGAATGATAGCTTGTGCTGCCGCCAGCATTCGCCATTCTGCTAGAAAGCGCCCAAAAATGAGCCAGATAGTACGTGCATTAGAAGGAGATGTATTACT GGATGTCTTAAATGAGGGCACAAGGAGTACTGGCCAGAGCCCGATGTTTTCCAGCTCGAACGGAAGCTCAGACTACGATACAAATTCGTATAATGCAGAT ATGAAAAGGTTCAGGCAGGTGGCGTTAGGTAGTCAGGGATTTGGGAGCAGTGAGCATGGAACATCAAGCAATGACTCCCGAGAAATGGACCCTTCAGGGA TCCACAGGAATTATCAATGA
AA sequence Show only first row Show all	>Potri.007G027000.1 pacid=42766747 polypeptide=Potri.007G027000.1.p locus=Potri.007G027000 ID=Potri.007G027000.1.v4.1 annot-version=v4.1 MSSTPDAPSPDSGSPPPPPASPPPENSTSAPPPQSDTPPPDTSSPPPPSPPPPPASPPPENSTSAPPPQSDTPPPDTSSPPPPSPPPPPPTSDSRSPPSP PPPKHREDASPPPPPPPKHREDASPPPPPSSENSQPAPPDSSNNGGGLTSDQIKIVVGVAVGFGIFLIALIFICAYCSRKKKRKNRHYYGENPQGGSEQF SYNYSAQQSNWQNGPPKEHVVKLSQSPGAMGSPWLAQPPTPPMGNSDDMSSINSGPYRPPLPPPPPNIALGFNKSTFTYDELAAATGGFDQANLLGQGGF GYVHKGVLPNGKEIAVKSLKAGTGQGEREFQAEVDIISRVHHRHLVSLVGYCIAGGQRMLVYEFVPNKTLEHHLHGKGLPVMEWPTRLRIALGSAKGLAY LHEDCHPRIIHRDIKAANILIDNNFEAMVADFGLAKLSSDNYTHVSTRVMGTFGYLAPEYAASGKLTEKSDVFSYGVMLLELITGKKPVDPSSAMEDSLV DWARPLTISALETGNFIELVDPMLESKYNHQEMQRMIACAAASIRHSARKRPKMSQIVRALEGDVLLDVLNEGTRSTGQSPMFSSSNGSSDYDTNSYNAD MKRFRQVALGSQGFGSSEHGTSSNDSREMDPSGIHRNYQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Potri.007G027000 [exp]	0	1
AT2G05920			Subtilase family protein (.1)		Potri.001G113533 [exp]	35.21	0.8058
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G177300 [exp]	38.57	0.8058
					Potri.018G047150 [exp]	41.42	0.6292
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.018G137400 [exp]	43.63	0.6356
					Potri.014G045150 [exp]	45.91	0.8058
AT5G08780			winged-helix DNA-binding trans...		Potri.005G069700 [exp]	46.73	0.6722
					Potri.019G036825 [exp]	49.79	0.8058
AT3G58610			ketol-acid reductoisomerase (....		Potri.019G089366 [exp]	51.02	0.8058
AT4G30880			Bifunctional inhibitor/lipid-t...		Potri.009G048900 [exp]	55.67	0.8058
AT3G54940			Papain family cysteine proteas...		Potri.010G228400 [exp]	55.96	0.8036

Compare expression of checked genes

Potri.007G027000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.