Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07610 84 / 1e-17 F-box family protein (.1) AT5G03970 83 / 3e-17 F-box associated ubiquitination effector family protein (.1.2) AT5G49610 75 / 9e-15 F-box family protein (.1) AT4G09190 62 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT3G26010 57 / 1e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G11620 57 / 1e-08 F-box and associated interaction domains-containing protein (.1) AT3G22730 56 / 2e-08 F-box and associated interaction domains-containing protein (.1) AT2G27520 55 / 3e-08 F-box and associated interaction domains-containing protein (.1) AT3G18910 54 / 7e-08 ETP2 EIN2 targeting protein2 (.1) AT1G71320 52 / 5e-07 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G124500 [exp] 626 / 0 AT5G03970 77 / 3e-15 F-box associated ubiquitination effector family protein (.1.2) Potri.007G027300 [exp] 215 / 7e-66 AT5G49610 80 / 2e-16 F-box family protein (.1) Potri.015G028500 [exp] 111 / 4e-27 AT5G49610 78 / 1e-15 F-box family protein (.1) Potri.005G254500 [exp] 84 / 1e-17 AT4G09190 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Potri.005G254633 [exp] 82 / 8e-17 AT4G09190 79 / 4e-16 F-box and associated interaction domains-containing protein (.1) Potri.010G254000 [exp] 82 / 9e-17 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.010G149000 [exp] 77 / 3e-15 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.018G132800 [exp] 72 / 1e-13 AT5G07610 158 / 1e-43 F-box family protein (.1) Potri.008G038000 [exp] 71 / 2e-13 AT1G64290 175 / 3e-51 F-box protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041733 [exp] 335 / 3e-111 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10024021 [exp] 334 / 3e-111 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10014320 [exp] 211 / 1e-64 AT5G07610 74 / 2e-14 F-box family protein (.1) Lus10015048 [exp] 77 / 3e-15 AT5G07610 74 / 3e-14 F-box family protein (.1) Lus10017086 [exp] 72 / 1e-13 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10037802 [exp] 68 / 4e-12 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10026028 [exp] 61 / 2e-11 ND 37 / 6e-04 Lus10042547 [exp] 55 / 6e-08 AT5G03970 405 / 3e-140 F-box associated ubiquitination effector family protein (.1.2) Lus10042989 [exp] 52 / 1e-07 AT5G07610 82 / 9e-19 F-box family protein (.1) Lus10022006 [exp] 50 / 2e-06 AT5G03970 400 / 2e-138 F-box associated ubiquitination effector family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G027200.1 pacid=42766706 polypeptide=Potri.007G027200.1.p locus=Potri.007G027200 ID=Potri.007G027200.1.v4.1 annot-version=v4.1 ATGGCTGATTTGGAGGAATACCAAATGGAAGAAATTGATGATGACCCCATCCATGTCATGTTAGAAGATGAGGGCACACGTGACATGATTCCAACTTATT CATACAAGTCCAGTTCTTACAAGAGTTCAGCAAGCTGTGCTAAATTTCCTGGTCACGTAAAGCAGGAGGACATAAAAATTGAAGATGTTGTTAGGCAGTA TGCTCTTTGTTTCCTTCCAGCCAAGTCAATATGCAGGTTCAAGACTGTTTCTAAAGAGTGGCTTAAGTGGATAGACAGTCCTTTTTTTTCCCACAAGCAG ACCAACCACTTCAAGCATGTTTCTGGTCTTTTCTGTCAGTTTCCTGGCGAGAGTCCCTCCTTCATATCATTCAATCCAGTTGCTTATGGCGTTTCTAGCC CCACTCTCCGTTTCTTGCCTGAATCTATTGATGTCCGAACCTCTTGCAATGGATTACTTGGCTGCCAAAGCCGCCTTGGAGATAATGCTTACTACATTTG CAACCCCGTGACTAAGGAATGGAGGGTGGTTCCAAAGCCAACTTTATATCATGGACCTGAAACAGCCATAGCACTTGCCTTTGAACCTGATGCACTCAAA TTTGGAGCGCAATATGAGCTTGTCTGTGCAGTCACTCTACCAGATAGGGCAGCTCTTCTGTTTGAAATATACTCTTCAAGGACAAACTCTTGGAGAGTAT GCACAGCTATGTGCTTGGAGCTGGATGCTCTGCCTCTTAATGGCGATGGTTTCTACATCAGAGGATTTGTCTTTTGGGAAACCCAATCAGGTGCAGTTCT GGGTTTCGATTGTAAGGAGGAAGAGTATGGAATTCTCAGTCTCCCACCTAGCAGCAACCCGACAGGTGCTTTGACAGAGTTGCGGGGGGAGTTGTGCTAC CTTCTGCCTCACAAAGAAGATGACGCATGGTCAATTGAGGTCTACGGAAATATGGACATGAGCCTGAGGCGTGTAATTCCTCTTCATTCTGAGGTTTTGG GTCATCTTGTAGATGGACAGTGCCGGGCTTTGGCATTTGTGAATGATGACACAATGATCATTGCTCTTGGGATGAAAGTGATTGCTTATCATGTAAGAGC ACATAAGATGGAGCGGGTAAGTGATGCCAGGACTGATGGTTTTGTGAAGTATTTGCCATACGTGAACAGCCTTGCACCCGTGGGCCCTTTCATGCGCGAC ACAGCTTTGTATCCGTGA
AA sequence Show only first row Show all	>Potri.007G027200.1 pacid=42766706 polypeptide=Potri.007G027200.1.p locus=Potri.007G027200 ID=Potri.007G027200.1.v4.1 annot-version=v4.1 MADLEEYQMEEIDDDPIHVMLEDEGTRDMIPTYSYKSSSYKSSASCAKFPGHVKQEDIKIEDVVRQYALCFLPAKSICRFKTVSKEWLKWIDSPFFSHKQ TNHFKHVSGLFCQFPGESPSFISFNPVAYGVSSPTLRFLPESIDVRTSCNGLLGCQSRLGDNAYYICNPVTKEWRVVPKPTLYHGPETAIALAFEPDALK FGAQYELVCAVTLPDRAALLFEIYSSRTNSWRVCTAMCLELDALPLNGDGFYIRGFVFWETQSGAVLGFDCKEEEYGILSLPPSSNPTGALTELRGELCY LLPHKEDDAWSIEVYGNMDMSLRRVIPLHSEVLGHLVDGQCRALAFVNDDTMIIALGMKVIAYHVRAHKMERVSDARTDGFVKYLPYVNSLAPVGPFMRD TALYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07610			F-box family protein (.1)		Potri.007G027200 [exp]	0	1
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.018G019800 [exp]	2.82	0.9068
AT1G24140			Matrixin family protein (.1)		Potri.015G103900 [exp]	3.00	0.9276
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.005G200100 [exp]	5.65	0.9008
AT4G12731			unknown protein		Potri.001G226650 [exp]	6.00	0.9055
AT1G35210			unknown protein		Potri.002G100500 [exp]	8.06	0.8958
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Potri.012G048700 [exp]	8.36	0.8876	Pt-GT4.1
AT1G13360			unknown protein		Potri.010G126000 [exp]	8.94	0.8400
AT4G12731			unknown protein		Potri.001G226750 [exp]	11.31	0.8903
AT4G28400			Protein phosphatase 2C family ...		Potri.018G150800 [exp]	12.12	0.8923
AT5G39670			Calcium-binding EF-hand family...		Potri.004G122900 [exp]	12.72	0.8888

Compare expression of checked genes

Potri.007G027200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.