Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49610 81 / 2e-16 F-box family protein (.1) AT5G03970 71 / 3e-13 F-box associated ubiquitination effector family protein (.1.2) AT5G07610 70 / 6e-13 F-box family protein (.1) AT3G06240 59 / 2e-09 F-box family protein (.1) AT1G15680 56 / 2e-08 F-box family protein (.1) AT3G23950 53 / 2e-07 F-box family protein (.1) AT1G11620 52 / 2e-07 F-box and associated interaction domains-containing protein (.1) AT1G62270 50 / 1e-06 F-box and associated interaction domains-containing protein (.1) AT3G61590 50 / 2e-06 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G16210 48 / 8e-06 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G124500 [exp] 221 / 4e-68 AT5G03970 77 / 3e-15 F-box associated ubiquitination effector family protein (.1.2) Potri.007G027200 [exp] 207 / 6e-63 AT5G07610 84 / 1e-17 F-box family protein (.1) Potri.010G149000 [exp] 87 / 7e-19 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.010G254000 [exp] 87 / 1e-18 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.010G224400 [exp] 83 / 3e-17 AT1G64295 161 / 1e-45 F-box associated ubiquitination effector family protein (.1) Potri.007G037500 [exp] 80 / 2e-16 AT1G64295 130 / 9e-35 F-box associated ubiquitination effector family protein (.1) Potri.015G028500 [exp] 80 / 2e-16 AT5G49610 78 / 1e-15 F-box family protein (.1) Potri.001G318400 [exp] 77 / 3e-15 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.008G038000 [exp] 76 / 4e-15 AT1G64290 175 / 3e-51 F-box protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014320 [exp] 393 / 3e-136 AT5G07610 74 / 2e-14 F-box family protein (.1) Lus10041733 [exp] 203 / 2e-60 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10024021 [exp] 200 / 1e-59 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10026028 [exp] 113 / 1e-30 ND 37 / 6e-04 Lus10015048 [exp] 87 / 1e-18 AT5G07610 74 / 3e-14 F-box family protein (.1) Lus10037802 [exp] 76 / 9e-15 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10017086 [exp] 70 / 7e-13 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10002769 [exp] 58 / 3e-09 AT1G15680 64 / 2e-11 F-box family protein (.1) Lus10042989 [exp] 57 / 3e-09 AT5G07610 82 / 9e-19 F-box family protein (.1) Lus10013986 [exp] 51 / 1e-06 ND 55 / 7e-08
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G027300.3 pacid=42766454 polypeptide=Potri.007G027300.3.p locus=Potri.007G027300 ID=Potri.007G027300.3.v4.1 annot-version=v4.1 ATGACGGATTTGTTATGTGTGTGTTTGATAAAATTTGAGGTTTTGTATGGTTCATTAAGTGGATTAAAATTTCTGTTTGCAGGTAAAATGGATCGAGGAA AGAAATCAAGTAAGCTCCTTGCAAACAAGAATAGCAAGAACCACATGGATTTACAAGATATTATCAGGGAGAGTGCCCTTCCTTTCCTTCCGGCCAAATC TCTTCATCGATGCACTGGTGTCTGTCGAGAGTGGAAGCTTCAGATCTCGACTCCTTTCTTTGCCCACAACCAGTCATATTCTTTCCGTGATGTATCGGGC TTCTTTTGTCAATCCCCATCAGGCACACCGTCATTTGTTTCCCTCAATCGAATGGCCTATGGTGTTCCAGACCCTTCTTTGAAGTTTTTGCCTGAACCAG TTGATATCAGGTGTTCTTCCAATGGACTACTCTGTTGCCAGGGTCGCACTGGATATCAGGCATACTACATCTGCAATCCTGTTACCCAAAAATGGAAGAA ACTCCCAGAACCTACTGCTAATCATGGGACTGATCCTGCTGTTGTGCTAGTCTTTGAGCCATCACTACTGAACTTTGTTGCTGAATACAAGCTGGTTGTT GCTTTTGCATCTGATCTTGACGGATTTGAATTTGAGATCTATTCATCTACAGATGGATTTTGGAGAATTTCTGCTGAGATTTCTTTTGGCAAGATGAAAC TCCTTCCGAGGACAGGTGTTCATGTCAATGGTGTTGTTTATTGGAGTTCTAGCATGGGTCGGATATTTTCTTTTGATCTCTCTTGTGAGCGATCAACATT CATCTATAACAATGGATGTAGTTCCTTAGGTGCGGTGAATGGGAAGCTTCATACTGCTTGTGTGCAAGGTTCGAAATTATCCGTAAATGAGCTGTCCAAT GCATACGCAAACACGATGCAGATGAATAGCAGTACAAAAACATGGCAGGCGAAGCATGCTGTAACTCTAAACTTTCCAGTACCTGATCTGTATCCCCGTT CCTACGATAAAGAAACTGTGTTGTTTTTAGGTGGTGACATGGTGGTGATGCGGTTTGAGAAAAAACTTATTTCCTATAACATGAAGACTAAAGAATTCAC AGAAGTCTTCACTGAAGAGGATACTTATTCCAGGATGGTTCCCTATGTGAATAGCCTTGTTGAGATATAG
AA sequence Show only first row Show all	>Potri.007G027300.3 pacid=42766454 polypeptide=Potri.007G027300.3.p locus=Potri.007G027300 ID=Potri.007G027300.3.v4.1 annot-version=v4.1 MTDLLCVCLIKFEVLYGSLSGLKFLFAGKMDRGKKSSKLLANKNSKNHMDLQDIIRESALPFLPAKSLHRCTGVCREWKLQISTPFFAHNQSYSFRDVSG FFCQSPSGTPSFVSLNRMAYGVPDPSLKFLPEPVDIRCSSNGLLCCQGRTGYQAYYICNPVTQKWKKLPEPTANHGTDPAVVLVFEPSLLNFVAEYKLVV AFASDLDGFEFEIYSSTDGFWRISAEISFGKMKLLPRTGVHVNGVVYWSSSMGRIFSFDLSCERSTFIYNNGCSSLGAVNGKLHTACVQGSKLSVNELSN AYANTMQMNSSTKTWQAKHAVTLNFPVPDLYPRSYDKETVLFLGGDMVVMRFEKKLISYNMKTKEFTEVFTEEDTYSRMVPYVNSLVEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49610			F-box family protein (.1)		Potri.007G027300 [exp]	0	1
AT3G59350			Protein kinase superfamily pro...		Potri.017G036300 [exp]	1.00	0.7258
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Potri.008G161700 [exp]	3.74	0.6301
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.006G006700 [exp]	4.89	0.6320
AT5G17210			Protein of unknown function (D...		Potri.019G048300 [exp]	6.32	0.7023
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G037500 [exp]	7.34	0.6952
AT1G22040			Galactose oxidase/kelch repeat...		Potri.002G091900 [exp]	10.95	0.6585
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.013G155600 [exp]	11.61	0.6223
AT1G02010		SEC1A	secretory 1A (.1.2)		Potri.014G069300 [exp]	12.16	0.6749	Pt-SEC1.1
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.014G106000 [exp]	13.22	0.5894
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.014G176500 [exp]	13.41	0.6328

Compare expression of checked genes

Potri.007G027300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.