Plant FIBer expression Database

Potri.007G027500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G50690 243 / 2e-75 Leucine-rich repeat (LRR) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G124700
[exp]
271 / 6e-86 AT3G50690 253 / 4e-79 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0022 LRR PF14580 LRR_9 Leucine-rich repeat
Representative CDS sequence
>Potri.007G027500.4 pacid=42766799 polypeptide=Potri.007G027500.4.p locus=Potri.007G027500 ID=Potri.007G027500.4.v4.1 annot-version=v4.1
ATGGATGAGATCTGGGAAAGAGCAGTGGAGACAGCATTAGAGGGGCAAACAGATAACTTAGCGGTAAGAGCCCTAACCCTAGACGGTGCTGTTAAGTGTA
TACAAGGAAGATTACCAGCAGCTCCAAGTTTATTTGAAAAATTCGAGAATCTTCAACACCTATCTATTGCAAGTATTGGCGTTTCAACGTTAGAGCAATT
TCCTCGTCTTGGAAATCTAGAGAAATTAATTTTATCTGATAATAGAATCTCCGGTGGATTAGAATTTCTGGTGGAAGCTGGACTCGATTCGCTTCGGGAT
TTGGATTTGTCAAATAATAGGATTCAGTATATTGAAGATCTAGCACCTTTGGCTAAGTTAAGGTTGGTTTCGCTTGATTTGTATGAGTGTCCGGTTACGA
GAGTCAAGGATTATCGGGCTAGGGTTTTTGGATTGATTAGTTCGTTGAAGTATTTGGATAAAATGGATGCTGAGGAGAATGAGAGACCGGAGTCTGATGA
TGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGATCCTGGGAGTGGTGAGGTTGATGGGGAGGGGGAAAGGCCGTTGGGAATGAATAACGGGCATAGTGAA
GTTGGGGAAGGGATTGTTGATGTGGATGAGGAAGAGGAGAGCGAGGCGGATGAGGAGGAGGCAGAGACGGGGAGAGATGGTAATGGGGTTAGACAGAATG
GGTTTCGGGTTGAGGTAGTGGACAGGAGGGGGGAGGAGGGAGGGGAGGGGGAGGAGTTTGGGGAAGAGGAAATTGATGAGGATGATGATGATGTGGTGGA
AGTGCATGAGATTGGTGACGATAGTGACGAGGATGATGATGCTGTGGAGTATGAGGAGGAGGAGGAGGACGACGACGATGATGACAACGAAGATGATGAT
GAAGAAGATGAAGAGGGGGAGGAGGAGGAGGTGGATAATGATGAAGGGGATCTTGGTGAGCCGGAGAGTACAGGAAGATTAACGAGTACAGAGGGGGAGA
TTGATGGGCATGAGCATGGGGAGGATGATGGTGAAGAGGATGATAATGGAGAGACTGGTGAGGAGGAGCAAGTTGTTGAGGATGATGGAGAGTTTGACGA
TGAGGAAGATGGTGAGGAGGAGGATGAAGACTCCGATGAAGGGTACTTGGTTCAACCAGTGGGGCAGGCAGAAGTTCATCATGATACTGGAGGCAGTGAC
TTGGAGCCAGGGAATGAGGAAGATGATCCTGAAGGGGAGGAAGAAGTTGATGATGATGATGAATTGCAGATGTTACCATCATCCTCACACCTTAAGAGGA
AGAGAGATGAAGACGAGGAGGAAGATGGTGAGGAGGGGGAGGAGGATGATGATGATGAGGAGGATGTTGTTGAATATACAAAGTCATCATCGAAGAAGCA
CCATTAG
AA sequence
>Potri.007G027500.4 pacid=42766799 polypeptide=Potri.007G027500.4.p locus=Potri.007G027500 ID=Potri.007G027500.4.v4.1 annot-version=v4.1
MDEIWERAVETALEGQTDNLAVRALTLDGAVKCIQGRLPAAPSLFEKFENLQHLSIASIGVSTLEQFPRLGNLEKLILSDNRISGGLEFLVEAGLDSLRD
LDLSNNRIQYIEDLAPLAKLRLVSLDLYECPVTRVKDYRARVFGLISSLKYLDKMDAEENERPESDDEEEEEEEEEEDPGSGEVDGEGERPLGMNNGHSE
VGEGIVDVDEEEESEADEEEAETGRDGNGVRQNGFRVEVVDRRGEEGGEGEEFGEEEIDEDDDDVVEVHEIGDDSDEDDDAVEYEEEEEDDDDDDNEDDD
EEDEEGEEEEVDNDEGDLGEPESTGRLTSTEGEIDGHEHGEDDGEEDDNGETGEEEQVVEDDGEFDDEEDGEEEDEDSDEGYLVQPVGQAEVHHDTGGSD
LEPGNEEDDPEGEEEVDDDDELQMLPSSSHLKRKRDEDEEEDGEEGEEDDDDEEDVVEYTKSSSKKHH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G50690 Leucine-rich repeat (LRR) fami... Potri.007G027500
[exp]
0 1
AT3G50690 Leucine-rich repeat (LRR) fami... Potri.005G124700
[exp]
2.23 0.8669
AT1G80930 MIF4G domain-containing protei... Potri.016G121100
[exp]
3.00 0.8969
AT5G19900 PRLI-interacting factor, putat... Potri.003G214300
[exp]
3.16 0.8931
AT5G09880 Splicing factor, CC1-like (.1) Potri.005G148100
[exp]
3.46 0.8644
AT5G08450 unknown protein Potri.004G135800
[exp]
5.29 0.8741
AT3G26560 ATP-dependent RNA helicase, pu... Potri.012G034200
[exp]
7.54 0.8785
AT5G45190 Cyclin family protein (.1.2) Potri.003G148800
[exp]
8.30 0.8143
AT1G56290 CwfJ-like family protein (.1) Potri.001G415900
[exp]
10.95 0.8569
AT3G63500 Protein of unknown function (D... Potri.001G264100
[exp]
11.22 0.8612
AT3G49601 unknown protein Potri.006G233000
[exp]
12.84 0.8471

Potri.007G027500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.