Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36650 575 / 0 ATPBRP plant-specific TFIIB-related protein (.1.2) AT2G41630 97 / 5e-22 TFIIB transcription factor IIB (.1) AT3G10330 94 / 4e-21 Cyclin-like family protein (.1) AT4G10680 53 / 7e-08 transcription factor IIB (TFIIB) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057100 [exp] 96 / 1e-21 AT3G10330 611 / 0.0 Cyclin-like family protein (.1) Potri.006G048400 [exp] 94 / 4e-21 AT3G10330 605 / 0.0 Cyclin-like family protein (.1) Potri.017G093100 [exp] 69 / 9e-13 AT3G10330 333 / 1e-114 Cyclin-like family protein (.1) Potri.015G067500 [exp] 64 / 6e-11 AT3G10330 499 / 5e-180 Cyclin-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024022 [exp] 665 / 0 AT4G36650 610 / 0.0 plant-specific TFIIB-related protein (.1.2) Lus10041732 [exp] 620 / 0 AT4G36650 605 / 0.0 plant-specific TFIIB-related protein (.1.2) Lus10035440 [exp] 86 / 4e-18 AT3G10330 603 / 0.0 Cyclin-like family protein (.1) Lus10016260 [exp] 85 / 9e-18 AT3G10330 499 / 5e-180 Cyclin-like family protein (.1) Lus10031055 [exp] 65 / 2e-11 AT3G10330 355 / 7e-124 Cyclin-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00382 [poplar] [flax] TFIIB Transcription factor TFIIB repeat
Representative CDS sequence Show only first row Show all	>Potri.007G027600.1 pacid=42765172 polypeptide=Potri.007G027600.1.p locus=Potri.007G027600 ID=Potri.007G027600.1.v4.1 annot-version=v4.1 ATGAAGTGCCCCTACTGCTCCGCCACACAAGGCCGCTGCGCCACAACAACAACCACAAACCGCTGCATAACCGAGTGCACATCTTGCGGCCGTGTTGTAG AAGAACGCCAATTTCACCCTCACCACCTCTTCCACCTCCGTGCACAAGACACCCCTCTTTGCCTCGTAACCTCCGATCTCCCGACCCTTCACCACCACCA CCAAAACGAAGAAGACCCATTTGAGCCCACAGGGTTTATAACCTCCTTCTCCACTTGGTCTCTCGAACCCAACCCAGTCTCCCTCCGTTCTTCTCTCTCT TTCTCCGGTCACCTTGCAGAACTTGAACGGACAATTGAACTAAGTGCTTCTACACCCGCTTCAAGTTCGAATGTCGTGGTGGATAATCTGAGAGCGTATA TGCAGATTATTGATGTGGCTTCGATTTTGGGCTTGGATTGTGATATATCAGATCATGCGTTCCAGTTGTTTAGAGATTGTTGTTCAGCTACTTGTTTGAG GAATCGGAGTGTCGAAGCTCTTGCTACAGCTGCTCTTGTTCAGGCTATTAGAGAAGCCCAAGAACCCAGAACCCTCCAGGAGATCTCGATTGCTGCCAAT GTACCTCAAAAGGAGATTGGGAAGTACATCAAGATATTGGGAGAAGCTTTGCAACTAAGTCAACCAATTAACAGCAATTCAATTTCAGTGCATATGCCTA GATTCTGCACTCTCCTCCAACTGAACAAATCTGCCCAGGAACTGGCAACTCACATTGGAGAAGTTGTTATCAACAAATGCTTTTGCACCCGGCGGAATCC CATTAGCATCTCTGCAGCTGCTATATATCTGGCATGCCAACTAGAAGATAAAAGAAAGACACAGGCAGAGATTTGTAAGGTGACAGGTCTCACAGAAGTC ACCCTCCGTAAAGTCTACAAGGAGCTTTTGGAGAATTGGGGTGATCTGCTTCCAAAAAATTATACTCCTGCTGTCCCTCCCGAGAAGGCATTTCCCACAA CTACAATTACCTCAGGCCGATCTTCTGCACCTAAAATTGATCCAGTTGAATTAGTATCTTCATCTTCGGAAAAAGATAAACAACTAGAGAGTAAATCAAA TAAGCCAAGTGAGTTGGCCAGAGGCAAAGAGGACGCTGAAAATAATGGTAATTCCCGTGGGATCCAACCTCCTCCATGGCAGAATTTCAGGCAGCCCTGG CTACAGTTTGTAACTTCTGGAGTTCGGATGGTGGGAGATACAAATCAGAACTTAGCTCGAGTGGATATCAATGAGTCGCAGCCTCGTCGTCAAGAGTTTG AAGAGAAGGCAGACAAGCAGAAAATGGATAAAGATCCAACAGCTTCAGCATGGCCAAACCAGTTATCTAGTTCCCCAGCTTCAGGTGCGAGCACAATCTC CTGGCCATTTCGGTCACCAACTTTATCAGGGCCTTCTCCAATAGTACAGCCACCACCCAAGCTAACACCAGGTTATGCTGAGCTTAAAGGTATTGGCAGT CAAAATGGAGGTAAAACTGGCAATAATAGTGGAGATAACAAGTAA
AA sequence Show only first row Show all	>Potri.007G027600.1 pacid=42765172 polypeptide=Potri.007G027600.1.p locus=Potri.007G027600 ID=Potri.007G027600.1.v4.1 annot-version=v4.1 MKCPYCSATQGRCATTTTTNRCITECTSCGRVVEERQFHPHHLFHLRAQDTPLCLVTSDLPTLHHHHQNEEDPFEPTGFITSFSTWSLEPNPVSLRSSLS FSGHLAELERTIELSASTPASSSNVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAAN VPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEV TLRKVYKELLENWGDLLPKNYTPAVPPEKAFPTTTITSGRSSAPKIDPVELVSSSSEKDKQLESKSNKPSELARGKEDAENNGNSRGIQPPPWQNFRQPW LQFVTSGVRMVGDTNQNLARVDINESQPRRQEFEEKADKQKMDKDPTASAWPNQLSSSPASGASTISWPFRSPTLSGPSPIVQPPPKLTPGYAELKGIGS QNGGKTGNNSGDNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Potri.007G027600 [exp]	0	1
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.002G039900 [exp]	1.00	0.9559	APG9.1
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Potri.001G296000 [exp]	1.41	0.9504
AT1G79060			unknown protein		Potri.007G065200 [exp]	3.00	0.9375
AT2G26140		FTSH4	FTSH protease 4 (.1)		Potri.006G227700 [exp]	4.35	0.8876	Pt-FTSH4.1
					Potri.002G208200 [exp]	5.91	0.9130
AT2G20330			Transducin/WD40 repeat-like su...		Potri.014G193500 [exp]	6.00	0.8923
AT3G26990			ENTH/VHS family protein (.1)		Potri.001G325700 [exp]	6.00	0.9118
AT5G04670			Enhancer of polycomb-like tran...		Potri.008G024300 [exp]	7.74	0.8867
AT3G21320			unknown protein		Potri.003G045000 [exp]	8.00	0.8936
					Potri.011G073666 [exp]	8.00	0.9122

Compare expression of checked genes

Potri.007G027600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.