Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65650 206 / 2e-68 Protein of unknown function (DUF1195) (.1) AT4G36660 194 / 6e-64 Protein of unknown function (DUF1195) (.1) AT1G19380 96 / 1e-25 Protein of unknown function (DUF1195) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G125000 [exp] 247 / 7e-85 AT5G65650 204 / 1e-67 Protein of unknown function (DUF1195) (.1) Potri.014G181600 [exp] 132 / 1e-39 AT4G36660 157 / 4e-49 Protein of unknown function (DUF1195) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014322 [exp] 225 / 6e-76 AT5G65650 244 / 3e-83 Protein of unknown function (DUF1195) (.1) Lus10026030 [exp] 220 / 4e-74 AT4G36660 239 / 1e-81 Protein of unknown function (DUF1195) (.1) Lus10007156 [exp] 117 / 4e-34 AT4G36660 142 / 1e-43 Protein of unknown function (DUF1195) (.1) Lus10010810 [exp] 107 / 1e-29 AT4G36660 152 / 3e-47 Protein of unknown function (DUF1195) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06708 [poplar] [flax] DUF1195 Protein of unknown function (DUF1195)
Representative CDS sequence Show only first row Show all	>Potri.007G027700.1 pacid=42765836 polypeptide=Potri.007G027700.1.p locus=Potri.007G027700 ID=Potri.007G027700.1.v4.1 annot-version=v4.1 ATGAAGGATGATGATTCGCTTCCAACGACAACAGCACCAAGCGTGAAAAAGGAAACCTCCGATTCCGTTCTATTCGGCAAAGGCCGGTACAAGTTCTGGG CTCTAGCAGCCATTTTGTTATTAGCATTCTGGTCAATGCTCACTGGCACCGTCACTCTCCGTTGGTCTGCCGGAAATCTCAACAGCCTCGTCGACGACAT CGACACTCCCATTCGCGACGATCTCGATGTCCTAGAAATGGAGGACAGAGAGAAAGTGGTGAAGCATATGTGGGATATATACACGAATAGCCGTCGGATC AGATTACCAAAATTTTGGCAAGAGGCATTTGAAGCTGCTTATGAAGAGTTGACTAGTGACGCATCAGATGTTAAAGAGGCTGCCATTGCTGAGATCGCTA AGATGTCTATTCGGTCTATTGATCTTGATCCGCTTCCGGTTCAATCTACGAGAGCACGAGAATTAAGTAAGAGTCTGAAGCTGGCTGCAGTGGCTTCAAA AGGGAGTGGTCATTGA
AA sequence Show only first row Show all	>Potri.007G027700.1 pacid=42765836 polypeptide=Potri.007G027700.1.p locus=Potri.007G027700 ID=Potri.007G027700.1.v4.1 annot-version=v4.1 MKDDDSLPTTTAPSVKKETSDSVLFGKGRYKFWALAAILLLAFWSMLTGTVTLRWSAGNLNSLVDDIDTPIRDDLDVLEMEDREKVVKHMWDIYTNSRRI RLPKFWQEAFEAAYEELTSDASDVKEAAIAEIAKMSIRSIDLDPLPVQSTRARELSKSLKLAAVASKGSGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65650			Protein of unknown function (D...		Potri.007G027700 [exp]	0	1
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Potri.006G082500 [exp]	4.24	0.6788
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Potri.002G148300 [exp]	5.38	0.6992	Pt-PBF1.1
AT4G19003		VPS25	E2F/DP family winged-helix DNA...		Potri.001G135700 [exp]	10.00	0.6176
AT5G12440	C3HZnF		CCCH-type zinc fingerfamily pr...		Potri.001G276300 [exp]	11.74	0.6448
AT5G53750			CBS domain-containing protein ...		Potri.011G050500 [exp]	12.36	0.5939
AT2G05590			TLD-domain containing nucleola...		Potri.010G065900 [exp]	15.65	0.5626
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.007G047800 [exp]	16.30	0.6400
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Potri.014G168100 [exp]	23.30	0.6766
AT1G12400			Nucleotide excision repair, TF...		Potri.001G116000 [exp]	23.49	0.5771
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.006G072400 [exp]	27.22	0.5916

Compare expression of checked genes

Potri.007G027700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.