Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36670 638 / 0 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 631 / 0 AtPLT3 Major facilitator superfamily protein (.1) AT3G18830 557 / 0 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16130 522 / 0 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G16120 520 / 0 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G20780 400 / 5e-135 AtPLT4 Major facilitator superfamily protein (.1) AT2G43330 192 / 4e-55 ATINT1 inositol transporter 1 (.1) AT5G26250 174 / 1e-48 Major facilitator superfamily protein (.1) AT5G59250 172 / 2e-47 Major facilitator superfamily protein (.1) AT1G30220 172 / 3e-47 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113600 [exp] 566 / 0 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 535 / 0 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 531 / 0 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.006G158700 [exp] 437 / 6e-150 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 394 / 1e-132 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 386 / 1e-129 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.017G032200 [exp] 203 / 3e-59 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G126800 [exp] 199 / 1e-57 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.001G248900 [exp] 171 / 4e-47 AT5G26250 652 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041731 [exp] 738 / 0 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10026032 [exp] 682 / 0 AT4G36670 645 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10014323 [exp] 674 / 0 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1) Lus10042339 [exp] 565 / 0 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 564 / 0 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 560 / 0 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 535 / 0 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 531 / 0 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 522 / 0 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 505 / 3e-176 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.007G027900.1 pacid=42765807 polypeptide=Potri.007G027900.1.p locus=Potri.007G027900 ID=Potri.007G027900.1.v4.1 annot-version=v4.1 ATGGTGTCAATAGAGGGTGGTGGTGGACAAAACCAGCAAAAATTGAACATGTATGCTGCTGGATGTGCTATAGTTGCTTCGATGATATCCATTATATTTG GATATGACACTGGAGTAATGAGTGGAGCCATGATATTCATAAAAGATGAACTGAAAATCCATGACACGGAAGTGGAAATCCTTGCTGGAATCTTAAACAT ATGTGCCCTGTTCGGTTCTCTTCTTGCTGGAAGAACTTCTGATTATATTGGCAGGCGGTACACAATTTTTGCAGCCAGCATCATCTTCATGCTTGGTTCA ATCCTGATGGGGTACGCTCCGAATTATGGTGTCCTGATGACAGGGAGATGCATTGCTGGGATTGGTGTAGGCTTTGCTCTGATGATTGCTCCTGTATATT CGGCAGAAGTTTCATCGCCATCGTACCGAGGCTTTTTGACATGTCTACCGGAGCTTGGAATAAGTATTGGTGTTTTACTTGGCTACATATCGAATGTTGC TTTCGGAGGATTGAGCCTGAAGCTTGGTTGGAGGATAATGCTTGGTATTGCAGCTATACCTTCACTCGCCTTGGCCTTTGGCATCCTAAAAATGCCAGAG TCTCCAAGGTGGTTAGTAATGCAAGGTCGTTTAGGAGAAGCCAAGAAAATCTTGCGCAGAGTATCCAACTCCGAAGAAGAAGCTGAAACCCGTCTTCGCG ACATAAAAGAAGTAGCTGGGATTGATGTGAATTGCAACGATGACTTTGTCAAGCCCGATCCCCTGAAGAAAACTCACGGGGAAGGGGTTTGGAAAGAGCT AATTATAAGGCCAACACCAGCAGTCCGTTGGATACTGATCGCCGCGGTCGGAATCCATTTCTTTGAGCATGCAGTTGGAATTGAAGCAGTTATTTTATAT AGTCCTAGAATCTTTAAGAAAGCCGGTATCGTTGGCAAGGAAAAGCTCTTGCGTGCAAGTGTTGGCGTGGGGCTTACAAAGTTCGTATTTGTATTCATTT CCACTTTCTTGGTGGATAGAGTGGGGAGAAGGCGCCTTCTTCTTGTTAGCACAGCAGGTATCATAGCAGCCCTGGCAGTATTAGGAACTTGCTTGACTAT AGTGGAGCATCACCATGGAGGGCAGCTGGTGTGGGCACTAAGCCTTTGCATTATTTCTACTTATACATTTGTAGCTTTCTTTAATATTGGACTTGCACCT GTGACATGGGTGTACAGCTCGGAGATATTCCCCCTGAAGCTAAGAGCACAAGGGTATAGCATTGGGGTTGCTGTGAATAGACTCATGAATGCCACTATTT CCATGAGTTTTATTTCGCTCTATGAAGCAATCACCATTGGAGGAGCCTTCTTCTTGTTTGCTGGCATCGCTGTGCTTGCCTGGTTTTTCTTCTATTTCCT ATTCCCAGAGACCAAAGGAAGGTCCTTGGAAGACATAGAAGAGCTGTTTAGCAAGGGTATAAGTGGTAGAGCTGAGGCTGTAAAGAGTGATATGTAG
AA sequence Show only first row Show all	>Potri.007G027900.1 pacid=42765807 polypeptide=Potri.007G027900.1.p locus=Potri.007G027900 ID=Potri.007G027900.1.v4.1 annot-version=v4.1 MVSIEGGGGQNQQKLNMYAAGCAIVASMISIIFGYDTGVMSGAMIFIKDELKIHDTEVEILAGILNICALFGSLLAGRTSDYIGRRYTIFAASIIFMLGS ILMGYAPNYGVLMTGRCIAGIGVGFALMIAPVYSAEVSSPSYRGFLTCLPELGISIGVLLGYISNVAFGGLSLKLGWRIMLGIAAIPSLALAFGILKMPE SPRWLVMQGRLGEAKKILRRVSNSEEEAETRLRDIKEVAGIDVNCNDDFVKPDPLKKTHGEGVWKELIIRPTPAVRWILIAAVGIHFFEHAVGIEAVILY SPRIFKKAGIVGKEKLLRASVGVGLTKFVFVFISTFLVDRVGRRRLLLVSTAGIIAALAVLGTCLTIVEHHHGGQLVWALSLCIISTYTFVAFFNIGLAP VTWVYSSEIFPLKLRAQGYSIGVAVNRLMNATISMSFISLYEAITIGGAFFLFAGIAVLAWFFFYFLFPETKGRSLEDIEELFSKGISGRAEAVKSDM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Potri.007G027900 [exp]	0	1
AT4G28940			Phosphorylase superfamily prot...		Potri.006G161538 [exp]	1.41	0.9824
AT1G55230			Family of unknown function (DU...		Potri.001G008900 [exp]	2.44	0.9733
AT3G27150			Galactose oxidase/kelch repeat...		Potri.001G331500 [exp]	5.74	0.9575
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Potri.013G023200 [exp]	7.34	0.9492
AT5G44440			FAD-binding Berberine family p...		Potri.011G158100 [exp]	7.54	0.9701
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Potri.014G014000 [exp]	9.79	0.9645
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.014G132500 [exp]	10.67	0.9627
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.011G061700 [exp]	11.40	0.9426
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Potri.001G268600 [exp]	14.42	0.9532	CADL9,CAD.6
AT3G19615			unknown protein		Potri.001G294800 [exp]	17.74	0.9470

Compare expression of checked genes

Potri.007G027900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.