Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18500 114 / 4e-29 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT5G19650 102 / 2e-25 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT3G52525 88 / 8e-21 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT2G36026 88 / 1e-20 OFP Ovate family protein (.1) AT5G58360 84 / 3e-18 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT2G36030 77 / 1e-17 unknown protein AT2G30400 80 / 9e-17 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1) AT1G06920 74 / 2e-14 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) AT5G01840 73 / 2e-14 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) AT4G18830 67 / 4e-12 OFP ATOFP5, OFP5 ovate family protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G125200 [exp] 501 / 3e-179 AT2G18500 111 / 7e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.002G262500 [exp] 146 / 1e-40 AT5G19650 94 / 2e-22 ovate family protein 8 (.1) Potri.018G080100 [exp] 114 / 5e-29 AT5G19650 107 / 8e-28 ovate family protein 8 (.1) Potri.006G156176 [exp] 110 / 1e-27 AT5G19650 104 / 8e-27 ovate family protein 8 (.1) Potri.009G161700 [exp] 95 / 6e-23 AT3G52525 61 / 6e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Potri.006G205400 [exp] 92 / 7e-22 AT2G36026 115 / 3e-32 Ovate family protein (.1) Potri.004G200500 [exp] 91 / 2e-21 AT3G52525 69 / 4e-15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Potri.016G072800 [exp] 91 / 2e-21 AT2G36026 118 / 1e-33 Ovate family protein (.1) Potri.013G155200 [exp] 84 / 7e-18 AT1G06920 130 / 3e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041730 [exp] 198 / 5e-61 AT2G18500 134 / 3e-37 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Lus10011092 [exp] 107 / 2e-26 AT5G19650 99 / 3e-24 ovate family protein 8 (.1) Lus10043243 [exp] 105 / 7e-26 AT5G19650 105 / 4e-27 ovate family protein 8 (.1) Lus10021302 [exp] 92 / 2e-21 AT3G52525 120 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10016978 [exp] 87 / 9e-20 AT3G52525 114 / 4e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10025241 [exp] 79 / 3e-16 AT1G06920 112 / 2e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10006092 [exp] 79 / 4e-16 AT5G01840 121 / 5e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10013318 [exp] 77 / 5e-16 AT3G52525 82 / 4e-19 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10014164 [exp] 76 / 9e-16 AT1G06920 104 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10008589 [exp] 77 / 2e-15 AT5G01840 120 / 6e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [poplar] [flax] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Potri.007G028000.1 pacid=42765949 polypeptide=Potri.007G028000.1.p locus=Potri.007G028000 ID=Potri.007G028000.1.v4.1 annot-version=v4.1 ATGGCTAAACGTTTCAGGCTCAAATTCTCTCGAGTGATCTCCTTTCAATCTTGCCGTTCCAAAGACCCTTCTACTCTCCCATCAAATCCTGTCCCTTCAT TTCTTAGACTATCTCCAGTCAACCACAACTCCATCATCATCAACAACCTCCATCTCCCACCCTCACAACCACCTCCTTCCAAACCTCTCCATCACTCTTC CATCAGGCGACATGTGTCCTCGGCATTCACATCAATGGGCTGTGGGTTTAGATCAAAACCCTCCACACATTACCTCTCTGAAACCGACCACACCAAATCC TCTCCACCAACTGAAAATTTCCACTGGGAAGAGGAAGAAAAATATCACGTTGTGGCCAAGCTCTTTGACGACGATTCAACACCCCGCCGCAAGATTTACA ACTCTTCAGCCTCTGAGGACTCCAAAAACCACGACGTTTTTCTCCCTCCATCTAAAATCGAGAAGAAAAAACGACGAGTCAAAAAGAAGAAAACGGCATC AAGAATCCGCATCAGCACTTCCTCAGCTGATAGCGGGATATTTTTTAGCGGCGACGAGCATGTCATAAACGACGAAGAAACAGAAACTCTAGTCTCTTCT TCGAGGAGCTTCTCCACTGATTCTTCCTCGGAATTCAATCCCCACTTAGAAACAATACGTGAATCTCCATTTTCACGTAAAAAGAGAGCTAAGAAGGCTA AAGGGCGTTGTGTTTTAAAGAATGGAGCGAAAGGAACAACGAGAAGAGGACGAAAGGAAAGAAATAGCCGCGATGGTTCTTTGTCGCCTGCAAGATTGTC GAGGTTTCAGTGGCTGATACCGTGCACGGTGGAGGGGAAGGTAAGAGAGAGCTTTGCGGTGGTGAAGAGATCAGAGGACCCATATGAGGATTTTAAGAGA TCAATGATGGAAATGATACTAGAAAAGGAAATGTTTGAAGAGAAAGATTTAGAGCAGTTGTTGCATTGTTTCTTGTCTTTGAATTCAAGGGAGCATCATG GGGTTATTGTTCAAGCTTTTAGTGAGATTTGGGAGACTTTGTTTTGTAGAAGAAGATCTATTTCTTATAGGGTTTCAGCTGTTTAA
AA sequence Show only first row Show all	>Potri.007G028000.1 pacid=42765949 polypeptide=Potri.007G028000.1.p locus=Potri.007G028000 ID=Potri.007G028000.1.v4.1 annot-version=v4.1 MAKRFRLKFSRVISFQSCRSKDPSTLPSNPVPSFLRLSPVNHNSIIINNLHLPPSQPPPSKPLHHSSIRRHVSSAFTSMGCGFRSKPSTHYLSETDHTKS SPPTENFHWEEEEKYHVVAKLFDDDSTPRRKIYNSSASEDSKNHDVFLPPSKIEKKKRRVKKKKTASRIRISTSSADSGIFFSGDEHVINDEETETLVSS SRSFSTDSSSEFNPHLETIRESPFSRKKRAKKAKGRCVLKNGAKGTTRRGRKERNSRDGSLSPARLSRFQWLIPCTVEGKVRESFAVVKRSEDPYEDFKR SMMEMILEKEMFEEKDLEQLLHCFLSLNSREHHGVIVQAFSEIWETLFCRRRSISYRVSAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Potri.007G028000 [exp]	0	1
AT2G01990			unknown protein		Potri.008G140900 [exp]	2.44	0.8050
AT4G07400		VFB3	VIER F-box proteine 3 (.1)		Potri.006G081600 [exp]	4.12	0.7665
AT5G43530			Helicase protein with RING/U-b...		Potri.003G083400 [exp]	4.47	0.8552
AT4G24265			unknown protein		Potri.003G001200 [exp]	6.16	0.8345
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.002G121500 [exp]	10.58	0.8152	CYCA3.1
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Potri.004G141500 [exp]	11.09	0.8156
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103100 [exp]	12.04	0.8068
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.008G112600 [exp]	12.40	0.7619
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.011G071800 [exp]	14.69	0.7556
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Potri.008G159900 [exp]	16.00	0.7180

Compare expression of checked genes

Potri.007G028000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.