Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	FML8
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25620 495 / 7e-175 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT4G13260 489 / 6e-173 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT1G04610 482 / 2e-169 YUC3 YUCCA 3 (.1) AT2G33230 477 / 8e-168 YUC7 YUCCA 7 (.1) AT5G11320 476 / 1e-167 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G28720 473 / 4e-166 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G43890 472 / 6e-166 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT1G04180 459 / 1e-160 YUC9 YUCCA 9 (.1) AT4G32540 458 / 1e-160 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT1G21430 345 / 2e-116 YUC11 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G036800 [exp] 521 / 0 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G243400 [exp] 520 / 0 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.002G254200 [exp] 497 / 9e-176 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.006G248200 [exp] 490 / 3e-173 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.008G174600 [exp] 487 / 1e-171 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.010G062400 [exp] 476 / 6e-166 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.018G033200 [exp] 466 / 1e-163 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.005G186100 [exp] 345 / 1e-116 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1) Potri.002G207400 [exp] 341 / 4e-115 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024023 [exp] 600 / 0 AT5G25620 479 / 7e-169 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Lus10041729 [exp] 597 / 0 AT5G25620 473 / 6e-166 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Lus10011093 [exp] 504 / 1e-178 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10023637 [exp] 503 / 1e-178 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10008092 [exp] 485 / 3e-171 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10013125 [exp] 484 / 5e-171 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10035244 [exp] 484 / 8e-171 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10023695 [exp] 484 / 2e-170 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10022851 [exp] 473 / 3e-166 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10011274 [exp] 456 / 8e-160 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13738 [poplar] [flax] Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.007G028200.1 pacid=42765969 polypeptide=Potri.007G028200.1.p locus=Potri.007G028200 ID=Potri.007G028200.1.v4.1 annot-version=v4.1 ATGGCAATGCAGACAACTGCTATCCAAGAACATAAAGGCAATGGGATATTTCATAAAGCTATGAGCTCAGAGAAGCCTGTTTGGATCCCTGGACCAGTGA TCATTGGCGCTGGACCCTCAGGGCTAGCTGTTGCAGCATGCCTTAAAGAAAGAGGTGTTCCCTTTTTGATACTAGAGAAAGAGAGATGTATAGGTTCTCT GTGGACACTGAAGACATACAATCGTCTACAGCTTCACCTCCCAAAGGAAACCTGCAAACTTCCTCACATGCCATTCCCTCCTGAAGTCCCAGCATACCCC ACTAAACAACAGTTCATAAGTTACTTGGAGGCTTATGCTAAGCATTTCGCAATTGAACCCATGTTTAGACAGGAGGTTCAATCAGCTATATATGATGCAA GAATGGGGTTCTGGCGGGTCCAATCCAACGAGTCTGAGTTTCTGTGCCGGTGGTTTATCGTAGCAACTGGAGAGAATGCAGAACCAGTGTTACCTAATAT TGAAGGAATCTCAGATTTTAAAGGAAGTTTAATCCACACCAGCAGATACAAGGACGGAGCTGATTTTAAAGGACAAAAGGTTTTGGTTGTAGGCTGTGGA AACTCAGGCATGGAGATTAGCTTAGATCTATGTAATAATGATGCTCAAGTTTCTCTGGCAGTGAGAGATAAGTTACACATCTTGCCTAGAGAGGTCCTTG GCAGATCAACCTTTTCTCTTTCAATGTGGTTGTTGAATTGGTTCCCAGTAAAATTAGTTGACCGGTTCCTCCTCATCTGCTCACAATTAATTCTAGGCGA CACACATAAAATGGGCATACGAAGACCCAAAATGGGACCACTTGAACAAAAAAATTCTACTGGGAAAACCCCAGTGCTGGATGTTGGAGCTTTCTCTAAA ATTAAATCAGGAAAAATCAAGGTGGTTTGCGGTGTTCAAAGATTTACAGCCAGCGGCGCAGAGTTTGTGGATGGACATGTAGAGAATTTTGATTCAGTAA TCTTAGCAACAGGTTATAGAAGCAATGTAACATCATGGCTCAAGGAGGACAGCTTCTTCAACGAGAAGGACGGTTATCCAAGAAATCCATTCCCCGACAA CTGGAAAGGCAAGAATGGACTTTACAGTGTTGGTTTTACCAGGAGAGGATTGTTGGGTTCATCCATTGATGCACAAAGAGTAGCAGAAGATATTGCAAGA CAATGGAACTGTGAGACAAAGCATTTGCGAATCGAGTCATGA
AA sequence Show only first row Show all	>Potri.007G028200.1 pacid=42765969 polypeptide=Potri.007G028200.1.p locus=Potri.007G028200 ID=Potri.007G028200.1.v4.1 annot-version=v4.1 MAMQTTAIQEHKGNGIFHKAMSSEKPVWIPGPVIIGAGPSGLAVAACLKERGVPFLILEKERCIGSLWTLKTYNRLQLHLPKETCKLPHMPFPPEVPAYP TKQQFISYLEAYAKHFAIEPMFRQEVQSAIYDARMGFWRVQSNESEFLCRWFIVATGENAEPVLPNIEGISDFKGSLIHTSRYKDGADFKGQKVLVVGCG NSGMEISLDLCNNDAQVSLAVRDKLHILPREVLGRSTFSLSMWLLNWFPVKLVDRFLLICSQLILGDTHKMGIRRPKMGPLEQKNSTGKTPVLDVGAFSK IKSGKIKVVCGVQRFTASGAEFVDGHVENFDSVILATGYRSNVTSWLKEDSFFNEKDGYPRNPFPDNWKGKNGLYSVGFTRRGLLGSSIDAQRVAEDIAR QWNCETKHLRIES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Potri.007G028200 [exp]	0	1	FML8
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Potri.003G169600 [exp]	9.11	0.9051
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.018G096070 [exp]	9.53	0.9386
					Potri.018G115601 [exp]	18.76	0.9535
AT3G55646			unknown protein		Potri.008G061700 [exp]	22.36	0.9307
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.018G096063 [exp]	26.45	0.9267
					Potri.001G227750 [exp]	27.05	0.9393
AT1G32780			GroES-like zinc-binding dehydr...		Potri.011G152800 [exp]	32.46	0.9230
AT1G73850			Protein of unknown function (D...		Potri.015G046900 [exp]	35.49	0.9420
AT3G16660			Pollen Ole e 1 allergen and ex...		Potri.010G012400 [exp]	36.33	0.9413
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Potri.008G010000 [exp]	36.78	0.8935

Compare expression of checked genes

Potri.007G028200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.