Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18510 454 / 3e-160 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G34110 134 / 1e-34 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G49760 132 / 7e-34 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT1G54080 124 / 8e-32 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G14100 121 / 1e-30 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71770 120 / 2e-29 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G22760 119 / 2e-29 PAB3 poly(A) binding protein 3 (.1) AT1G17370 116 / 8e-29 UBP1B oligouridylate binding protein 1B (.1.2) AT2G23350 117 / 2e-28 PABP4, PAB4 poly(A) binding protein 4 (.1) AT5G19350 101 / 1e-23 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G125300 [exp] 481 / 6e-171 AT2G18510 412 / 3e-144 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G304000 [exp] 132 / 1e-33 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.009G099300 [exp] 130 / 4e-33 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.014G025400 [exp] 126 / 1e-31 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G124200 [exp] 126 / 1e-31 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G062700 [exp] 117 / 1e-28 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.006G139300 [exp] 113 / 6e-28 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.005G198500 [exp] 114 / 2e-27 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.001G166100 [exp] 111 / 3e-27 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041728 [exp] 496 / 8e-177 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10024024 [exp] 292 / 1e-98 AT2G18510 275 / 5e-92 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002835 [exp] 128 / 3e-32 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 128 / 3e-32 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 126 / 1e-31 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 126 / 1e-31 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10011924 [exp] 115 / 1e-28 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10027641 [exp] 115 / 1e-28 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10008130 [exp] 108 / 4e-26 AT1G17370 664 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10027733 [exp] 108 / 2e-25 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.007G028300.1 pacid=42765153 polypeptide=Potri.007G028300.1.p locus=Potri.007G028300 ID=Potri.007G028300.1.v4.1 annot-version=v4.1 ATGACGACTCGAATAGCACCGGGTGTTGGAGCTAACTTACTTGGCCAACACTCAGCCGAGAGAAATCAAGATGCTACTGCTTACGTTGGCAATCTCGATC CTCAAGTTTCCGAGGAATTACTTTGGGAATTATTTGTTCAAGCCGGTCCTGTTGTTAATGTTTATGTTCCTAAGGATAGAGTAACAAATCTTCACCAAGG ATATGGATTCGTAGAGTTTCGGAGTGAAGAAGATGCTGATTATGCAATTAAGGTTTTGAATATGATTAAGCTTTATGGTAAGCCAATTCGTGTAAATAAG GCGTCACAAGATAAAAAGAGCCTGGATGTGGGAGCGAATCTCTTTATTGGAAATCTTGACCCTGATGTTGATGAGAAACTTCTGCATGATACTTTCAGTG CATTTGGAGTAATTGTTACAAATCCTAAGATAATGAGAGATCCAGAGACTGGAAATTCCCGAGGTTTTGGTTTCATCAGTTATGATTCATTTGAAGCATC TGATGCAGCTATTGAGGCAATGAATGGTCAGTATCTTTGCAACCGTCAGATAACAGTCTCATATGCATACAAGAAAGACACTAAAGGGGAGCGCCATGGT ACTCCAGCAGAGAGAGTTTTGGCTGCAAGCAATCCAACTACCCAAAAGAGCAGGCCCCACACTCTGTTTGCCAGTGGACCTCCAACACTTGCCTCTCAGG CCAATGGTGCTATGGTCGCACCTGTGCCTCCACGTCCCTTTGCAAATGGTGTTGTAGCTCCAGGACCAATTCCAGCACTGCGCCCTCCGCCCCCACCAAA TGCAGCATTTGCACCGATGCAGGTTGGTGGTCAATCAGCTTGGCATGGCCAGCCACCTCAACAAGGTCAACCAATGCCACCTCCGGTCATGCCTGCACCT CCTGTTCAATTCAGGCCACCCCCTCCAAACATGCAACAACCTCCTATGCAAGGAGCTCCCATGTTCCCAAGGCCTCCCCCACAGCCCATGGCCATGGGAG CCCAACAACAAGTTTGGCGACAGCCACCACCACCACCACAGCAATTTGCTGGAAGGCCCCATATGCCACAAATGTTGATGCAACCACCGCCACCACCCAA TGCGCTACCACCACCACCACCACCCTCAAGTTGA
AA sequence Show only first row Show all	>Potri.007G028300.1 pacid=42765153 polypeptide=Potri.007G028300.1.p locus=Potri.007G028300 ID=Potri.007G028300.1.v4.1 annot-version=v4.1 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK ASQDKKSLDVGANLFIGNLDPDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHG TPAERVLAASNPTTQKSRPHTLFASGPPTLASQANGAMVAPVPPRPFANGVVAPGPIPALRPPPPPNAAFAPMQVGGQSAWHGQPPQQGQPMPPPVMPAP PVQFRPPPPNMQQPPMQGAPMFPRPPPQPMAMGAQQQVWRQPPPPPQQFAGRPHMPQMLMQPPPPPNALPPPPPPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.007G028300 [exp]	0	1
AT1G65030			Transducin/WD40 repeat-like su...		Potri.012G107400 [exp]	1.00	0.9495
AT2G32840			proline-rich family protein (....		Potri.001G229800 [exp]	1.41	0.9440
AT2G32600			hydroxyproline-rich glycoprote...		Potri.006G121300 [exp]	2.00	0.9202
AT1G07030			Mitochondrial substrate carrie...		Potri.009G077600 [exp]	4.89	0.9151
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Potri.007G071700 [exp]	5.29	0.9079
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.006G253100 [exp]	5.29	0.8906
AT1G80750			Ribosomal protein L30/L7 famil...		Potri.003G180700 [exp]	6.00	0.8885
					Potri.002G246900 [exp]	6.00	0.9041
AT3G61370			Protein of unknown function (D...		Potri.016G069200 [exp]	6.32	0.9185
					Potri.017G152460 [exp]	6.63	0.8980

Compare expression of checked genes

Potri.007G028300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.