Plant FIBer expression Database

Potri.007G028600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G49530 503 / 2e-170 SIN-like family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037936
[exp]
451 / 1e-150 AT5G49530 344 / 3e-109 SIN-like family protein (.1)
Lus10041724
[exp]
410 / 1e-136 AT5G49530 268 / 1e-81 SIN-like family protein (.1)
Lus10024027
[exp]
114 / 3e-28 AT5G49530 78 / 2e-16 SIN-like family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0662 Triple_barrel PF04801 Sin_N Sin-like protein conserved region
Representative CDS sequence
>Potri.007G028600.4 pacid=42765119 polypeptide=Potri.007G028600.4.p locus=Potri.007G028600 ID=Potri.007G028600.4.v4.1 annot-version=v4.1
ATGGACCTGGACGGCCTAGACGAACCGAGCAAGGTACGAAAACCACCCAGCAGATTCGCGCCAACTTCAAAGAAACCTCAACCAAAATCAAAACCTAAAC
CTAAACCCGAACCTCAGGAATCAGTACCGGTGGGACCAAAACCCGACCCTTCAGTTTCTAACACAGCCGAAGATGCTAAACCTAAAATTGATGATACGCT
TTCGAAGACGGAAACGGGGGTTTCCAATGGTAATGTGAAGATGGAAATTGATGCTAAAGAAGAGAGAGGAGCAGCTGTAAAGGAAAATGATCTAATGGAT
GTTGATAAAGAAGAGGATGAGGATGATGTGGTTGTTCGCGAAATTGATGTTTACTACACTCCGTCCGTCGACCCCAACACTCAGTTATATGTAATGCAAT
ATCCATTGAGGCCGTGTTGGAGACCGTATGAATTGGATGAAAGATGTAAAGAGGTTAGAGTGAAACCTGAAAGCACCGAAGTGGAGGTTGATTTGTCTAT
TGATGATACTAAAAACTATGACCCTGATATTGCTAGCAGATTGAATATGAAAAAGCAGACTTTGTCGTCCTCATGGTCGCCGCCTCCTGCTACTGGGTAT
GCTGTTGGGGTTCTTATAGGTAATAAGTTACACCTGAATCCTATTCATGCAGTGGTGCAGCTTCGGCCATCAATGGACTATTTAAGTTCTGGTAATTCTA
AAGGGAAAAAAAATGCCACAAGTGGAGAAGATTCCAATGAGGGGAAACCCTTGGGTCTACCAAAGAAGCAGAGCAAGCAGATGAGTTCAGGAAATGAGCA
AAAGCCAGATGTTGAGGAGTCTTGGATTCCTCTGAAGTACCATGGCTCAAAAAGTGATTTATCTTCCAGATATCTACAGAACATGGTGGCCCCAGAAAGT
TCTACCATTGAGTTTGCAATGAACCCGTATGACTACATGAGCTCCTTGTGTCCTGGGATATCAAACAACAATATTAAACTCAATGGTCCTTCAAGAAGAT
GTTGTTACAGGGTTTTGCTTTCACTGCCTCTGGAAGAACGAATTAAGAGGCTGTTTTTGGAGGGACCTCCAATTCATCGGTTTGCTGCTCTTAGGCATCT
TATTCCAAATGACTCCATTGAAGATCTCTTAATAGTTCTTCAGGAGTATGGGCAATTAGTGCAAGGACTATGGGTGCCAAAAACGAGTTTACTGTTTCCC
AACCCAAAGCCAACTGAAAAGGTTAAACTTGCAGCTAGAGATTACATACTTCTTTTATTTAGCAAGAGTTTGGTGGTCACCCCTTCAGAACTTAATGTCC
CAATGAAGCCTCTGATTCTGAAGAGCTTCCTGAATATATTTGCTGTTGAAAGGCCTTCCTTTAAGGATTGGAAGTTCAAAGAAAATGTGGATACATTGTT
TGTAGAACTGTACCCAGACATTGTTAGAAAGCAAGAACAAGCTTGGGAAGTCATGGGAAAAAACATTTCTGCTGCTTTTGATCGAGCTGGAAAAAGTGTG
TCCAAGAATGTGATAACAAAGCCGAAGAAAACCATGACAGATGAAACTCGAGAAGCTCTGCGGAAGGCCTTGCCAAAAGTTCTCCAAACTCACAAGGTTT
GCAGTTTTCAAATGATTTGCCAAGGTTTGCGACAGTTGGCCATCTCTCAGTCTACTCTTCCAAAGGCAGATCCTAGAATTGCAGTAGCTGCAGCCTCTGG
TGCTGAAGCTCCTCCAGAGGAACTTCAAGAAGTCATAAGTGAAGTCGCAACTAATATTCATGGCTTTTATGTTTTGAAGTCTTCACCAGAACACCCAGAT
TTTGATCCATTGAGAAAAGTTGTAATTGGGCTTTTTCTAGCAAGAGGACCTAATGCGAATATTAAGAAGTCAGAGGTCCAAGCAGCAGCCAGGCTTGAGC
TTAAGAGGGAGCCTTCAAACAGTGAATATATTAAGGTCATGACTGATTTATGCGAATCCAAAGGTTCTGCGTGGGTATTGAAGAGTGGTGATGGAAAACC
ATCATGA
AA sequence
>Potri.007G028600.4 pacid=42765119 polypeptide=Potri.007G028600.4.p locus=Potri.007G028600 ID=Potri.007G028600.4.v4.1 annot-version=v4.1
MDLDGLDEPSKVRKPPSRFAPTSKKPQPKSKPKPKPEPQESVPVGPKPDPSVSNTAEDAKPKIDDTLSKTETGVSNGNVKMEIDAKEERGAAVKENDLMD
VDKEEDEDDVVVREIDVYYTPSVDPNTQLYVMQYPLRPCWRPYELDERCKEVRVKPESTEVEVDLSIDDTKNYDPDIASRLNMKKQTLSSSWSPPPATGY
AVGVLIGNKLHLNPIHAVVQLRPSMDYLSSGNSKGKKNATSGEDSNEGKPLGLPKKQSKQMSSGNEQKPDVEESWIPLKYHGSKSDLSSRYLQNMVAPES
STIEFAMNPYDYMSSLCPGISNNNIKLNGPSRRCCYRVLLSLPLEERIKRLFLEGPPIHRFAALRHLIPNDSIEDLLIVLQEYGQLVQGLWVPKTSLLFP
NPKPTEKVKLAARDYILLLFSKSLVVTPSELNVPMKPLILKSFLNIFAVERPSFKDWKFKENVDTLFVELYPDIVRKQEQAWEVMGKNISAAFDRAGKSV
SKNVITKPKKTMTDETREALRKALPKVLQTHKVCSFQMICQGLRQLAISQSTLPKADPRIAVAAASGAEAPPEELQEVISEVATNIHGFYVLKSSPEHPD
FDPLRKVVIGLFLARGPNANIKKSEVQAAARLELKREPSNSEYIKVMTDLCESKGSAWVLKSGDGKPS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G49530 SIN-like family protein (.1) Potri.007G028600
[exp]
0 1
AT1G58060 RNA helicase family protein (.... Potri.004G222900
[exp]
2.00 0.8140
AT1G19340 Methyltransferase MT-A70 famil... Potri.014G041400
[exp]
4.47 0.7456
AT1G20760 Calcium-binding EF hand family... Potri.007G063200
[exp]
6.00 0.7994
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Potri.001G160700
[exp]
7.34 0.7472
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Potri.003G074200
[exp]
9.79 0.7834
AT1G08600 ATRX, CHR20 P-loop containing nucleoside t... Potri.019G021500
[exp]
10.67 0.7733
AT1G08600 ATRX, CHR20 P-loop containing nucleoside t... Potri.013G048500
[exp]
11.83 0.7636 CHR923
AT4G04920 AtSFR6, SFR6 sensitive to freezing 6 (.1.2) Potri.004G040400
[exp]
19.62 0.7610
AT1G16540 ACI2, ABA3, SIR... SIRTINOL RESISTANT 3, LOW OSMO... Potri.007G066400
[exp]
20.85 0.7766 Pt-ABA3.1
AT5G16780 MDF, DOT2 MERISTEM-DEFECTIVE, DEFECTIVEL... Potri.003G148501
[exp]
21.35 0.7654

Potri.007G028600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.