Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66730 416 / 7e-141 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT3G50700 385 / 1e-129 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT1G03840 302 / 2e-96 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G44160 296 / 1e-94 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT1G55110 295 / 3e-94 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT4G02670 290 / 3e-93 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT3G13810 292 / 2e-92 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT3G45260 289 / 4e-92 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G02080 290 / 1e-91 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT1G14580 285 / 3e-90 C2H2ZnF C2H2-like zinc finger protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G125600 [exp] 665 / 0 AT5G66730 429 / 4e-146 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.017G017100 [exp] 308 / 5e-99 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.003G036900 [exp] 307 / 6e-98 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1) Potri.002G048000 [exp] 305 / 6e-98 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.005G215100 [exp] 305 / 7e-98 AT1G03840 328 / 1e-107 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.007G135000 [exp] 304 / 2e-97 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.006G129300 [exp] 304 / 4e-97 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.013G019200 [exp] 301 / 7e-96 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.016G088500 [exp] 300 / 7e-96 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041723 [exp] 483 / 6e-167 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10010820 [exp] 308 / 1e-101 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 311 / 9e-100 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10019927 [exp] 288 / 3e-91 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 288 / 3e-91 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10008396 [exp] 286 / 1e-89 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10004497 [exp] 282 / 4e-89 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10041356 [exp] 292 / 2e-88 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10029904 [exp] 279 / 3e-88 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1) Lus10004840 [exp] 280 / 1e-87 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF12171 [poplar] [flax] zf-C2H2_jaz Zinc-finger double-stranded RNA-binding
Representative CDS sequence Show only first row Show all	>Potri.007G028800.4 pacid=42766327 polypeptide=Potri.007G028800.4.p locus=Potri.007G028800 ID=Potri.007G028800.4.v4.1 annot-version=v4.1 ATGCCTGTTGATTTAGATAATTCATCTACAGCTTCTGGTGAAGCTAGTGTCTCTTCATCTGGTAACCAACCACCACCACCACAACAACCACCGTCCAAGT CTGCCGCCACCGCTAAGAAAAAACGTAACCTCCCTGGAATGCCAGATCCCGAAGCAGAGGTGATAGCCTTATCGCCAAAGACCCTTTTAGCTACAAATCG ATTTGTATGTGAAATATGCAACAAAGGGTTTCAAAGAGACCAAAACTTGCAACTTCATCGACGAGGACATAATCTACCATGGAAATTAAGGCAAAGATCA AGTAAAGATGTGAAGAAGAGAGTTTATGTATGTCCAGAACCAACTTGTGTACACCATGATCCATCAAGAGCTCTTGGCGATCTTACAGGAATAAAGAAGC ATTTTTGCAGAAAACATGGGGAAAAGAAGTGGAAATGCGATAAATGTTCGAAGAAGTATGCTGTTCAGTCTGATTGGAAGGCTCACTCAAAGATTTGTGG TACTAGAGAGTATAAATGTGATTGTGGTACTCTGTTTTCAAGGAGGGATAGCTTTATTACACACAGAGCATTTTGTGATGCCTTGGCGGAGGAGAGTGCT AGAGCTCAAACTCAGACTCCGAACCCAAATCCAAAACCAAATCAGGAATCTGACCCGAAAGTGCAAGTTGATTCATCTCCACCGCCAGCACCAGTAGCCC CACCAGTGGCTCCTGATTTTGGTTCGGATCAGGGCCAGGCGCCACCAGGACTAGCTCAGTCAACTGGGATGATATCATCTCCAGTTCTGGCAATTCAGAG TCCAGAGTTATCAGATGATCCCTCACAAATTATAGAAGAAGCACCAGCACCAGCACCAGCACCGGCACCGGCTCCAGCTCCAGCTCCAGCCACGGTAACT GCAGGGTTCAATGGAAGCTTCAGCAGTAGCACTAGCTCAAGCAGCAATGGCAGCAGCACCAGTAGTGTGTTTGCTAGTTTATTTGCTTCCTCAACTGCTT CAGGAAGCTTGCAGGCTCCTCAGACTACTGCATTTACTGATCTAATTCATGCCATGGCCCATCCTGATCGTCCAACAGACCTTACTCCATCCTCAACTGA ACCAATTTCTTTGTGTCTCTCCACCAATCACGGGTCATCGATATTCGGCACTGCAGGGCAGGAACGTAGGCAATATGCACCACCGCCACAACCAGCTATG TCTGCAACTGCACTGTTACAGAAAGCTGCTCAAATGGGGGCTGCTGCTACAAATGCATCGTTGCTTCGTGGGCTTGGAATCGTGTCATCTTCTTCATCGT CTGCCCAGCCAGACAATATGCAATGGGGTCATAGGCAAATGGAGCCTGAGAATGCCTCAGTTACTGCCGGGCTTGGACTGGGCCTGCCTTGTGATGGAGG TTCTGGACTGAAGGAATTGATGATGGGAACTCCTTCTGTATTTGGTCCGAAGCATGCCACTCTTGATTTTCTTGGACTGGGGATGGCAGCTGGTGGGAGC CCTAGTGGTGGTCTATCGGCTCTCATTACATCTATTGGTGGTGGTCTTGATGTGGCTGCAGCAGCGGCTTCTTTTGGAGGTGGAGAATTTTCTGGCAAGG ACATGCGAAGGAGCTGA
AA sequence Show only first row Show all	>Potri.007G028800.4 pacid=42766327 polypeptide=Potri.007G028800.4.p locus=Potri.007G028800 ID=Potri.007G028800.4.v4.1 annot-version=v4.1 MPVDLDNSSTASGEASVSSSGNQPPPPQQPPSKSAATAKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRS SKDVKKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESA RAQTQTPNPNPKPNQESDPKVQVDSSPPPAPVAPPVAPDFGSDQGQAPPGLAQSTGMISSPVLAIQSPELSDDPSQIIEEAPAPAPAPAPAPAPAPATVT AGFNGSFSSSTSSSSNGSSTSSVFASLFASSTASGSLQAPQTTAFTDLIHAMAHPDRPTDLTPSSTEPISLCLSTNHGSSIFGTAGQERRQYAPPPQPAM SATALLQKAAQMGAAATNASLLRGLGIVSSSSSSAQPDNMQWGHRQMEPENASVTAGLGLGLPCDGGSGLKELMMGTPSVFGPKHATLDFLGLGMAAGGS PSGGLSALITSIGGGLDVAAAAASFGGGEFSGKDMRRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Potri.007G028800 [exp]	0	1
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G204300 [exp]	2.00	0.8796
AT3G18770			Autophagy-related protein 13 (...		Potri.019G010700 [exp]	2.00	0.8933
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.002G180100 [exp]	2.44	0.8899	PtrMTP2,Pt-MTP1.2
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G138500 [exp]	3.87	0.8546	Pt-NPH4.2
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.001G276600 [exp]	4.89	0.8526
AT3G57120			Protein kinase superfamily pro...		Potri.008G037401 [exp]	8.48	0.8323
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.010G216200 [exp]	8.48	0.7825
AT3G26932		DRB3	dsRNA-binding protein 3 (.1.2)		Potri.005G045700 [exp]	8.83	0.8282
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.010G110700 [exp]	10.00	0.8190	GAI.1
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.008G116000 [exp]	10.72	0.8142

Compare expression of checked genes

Potri.007G028800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.