Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18540 392 / 1e-126 RmlC-like cupins superfamily protein (.1) AT4G36700 363 / 9e-118 RmlC-like cupins superfamily protein (.1) AT2G28490 169 / 2e-45 RmlC-like cupins superfamily protein (.1) AT3G22640 74 / 9e-14 PAP85 cupin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054700 [exp] 197 / 2e-55 AT2G28490 522 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.001G259208 [exp] 78 / 4e-16 AT2G28490 0 / 1 RmlC-like cupins superfamily protein (.1) Potri.005G224700 [exp] 54 / 3e-07 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224400 [exp] 53 / 5e-07 AT5G44120 280 / 4e-89 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G212333 [exp] 51 / 1e-06 AT3G22640 76 / 2e-15 cupin family protein (.1) Potri.019G004400 [exp] 45 / 0.0002 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004500 [exp] 44 / 0.0003 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.002G038100 [exp] 44 / 0.0003 AT5G44120 400 / 9e-136 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.008G102900 [exp] 44 / 0.0004 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041722 [exp] 510 / 3e-172 AT2G18540 401 / 2e-132 RmlC-like cupins superfamily protein (.1) Lus10037937 [exp] 508 / 7e-171 AT2G18540 400 / 2e-131 RmlC-like cupins superfamily protein (.1) Lus10011364 [exp] 170 / 8e-46 AT2G28490 466 / 2e-161 RmlC-like cupins superfamily protein (.1) Lus10006420 [exp] 169 / 1e-45 AT2G28490 471 / 2e-163 RmlC-like cupins superfamily protein (.1) Lus10042617 [exp] 97 / 8e-21 AT3G22640 202 / 2e-58 cupin family protein (.1) Lus10042615 [exp] 96 / 1e-20 AT3G22640 201 / 3e-58 cupin family protein (.1) Lus10022070 [exp] 89 / 4e-18 AT3G22640 205 / 8e-60 cupin family protein (.1) Lus10022072 [exp] 61 / 5e-10 AT3G22640 114 / 4e-29 cupin family protein (.1) Lus10003554 [exp] 53 / 8e-07 AT1G03890 282 / 5e-90 RmlC-like cupins superfamily protein (.1) Lus10021868 [exp] 50 / 6e-06 AT5G44120 330 / 2e-109 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00190 [poplar] [flax] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Potri.007G029100.2 pacid=42765601 polypeptide=Potri.007G029100.2.p locus=Potri.007G029100 ID=Potri.007G029100.2.v4.1 annot-version=v4.1 ATGCTGCAAAAGGTGCCGCTTTTATCACTCCTGTTTTTGGGTTTACTACTCTGTCTCTCTATTCATGTAGAGGCCTTCAGTGAGGATGTTTCAGCTTGGG AGAGACCTTATCTGGTGAGGAGAGGACACAGGAGGTCTCTGGTGGTGACAGAATATGGAGAGATTTCAGCTGCTGAAATTAGTAGTGGAACAAAAGGGCC ATACCATATTCAGTTCATCACATTGGAGCCTAACTCCTTGTTGCTCCCTGTGCTTCTCCATGCTGACATGGTCTTTTATGTACACACAGGGAATGGGAAG TTGAGTTGGACCGATGGAAGAGAAATGAAGAGGATGAATCTACGGAGAGGAGATGTATATAGACTGCAGGCAGGCTCAGTTTTCTTTGTTCGAAGTAACC TAGACTCGGAAAGACAGAAGATGAGGATCCATGCTATCTTTTCCAATACAGATGAGGACATATATGAGCCATCAATTGGAGCATACTCTAGCGTCAGCGA TCTGGTCCTTGGATTTGATAGAAAAGTCCTTCAAGAGGCTTTTAAGGTCCCTGAAGAAGTTTTAGAGGAATTAACCAGTGCAACGAAGCCACCAGCAGTG GTGCACGCAGTAACAAAGGATCAGAAATCAGTATACTGGGAATTGGAAGACCGAATGCTAGATTTCCTTATCGGAAACAAACATAAGAAAACCAAGGAAA CCAAGACATTCAACATTCTAGATGCTAAGCCAGATTTTGAGAATTGTAATGGGTGGAGTCTGACTGTAGACAAACATAGCTTGAAATCACTAAGTGATTC CAACATTGGAATATTCATGGTGAACTTGACAAAGGGATCCATGATGGGGCCACATTGGAATCCAATGGCTACTGAGATAGCAATAGTGTTGCACGGGCGA GGGATGGTTCGGGTGATTTGTCATAGCACAGCAAATGAATCAGAGTGCAAAAACATGAGGTTTAAGGTTAAGGAAGGGGATGTTTTTGCAGTGCCTAGGT TCCATCCTATGGCTCAAATTTCCTTCAACAATGATTCATTTGTTTTCATGGGGTTCAGCACATCAACAAAGAGAAATCATCCTCAATTTCTGACTGGGAA GAGCTCAATCCTCCAAATATTGGACAGAGGCATCTTGGCTGTGTCATTCAATGTTACTAACACCACAATGGATCAGCTTTTAAATGCTCAGGAAGAAGCG CTCATATTGGATTGCACTTCTTGTGCTGAGATAGAGGAGAATAAAATGAAGGAAGAATTTGAAAAGGAAAAGCAGGAAGAGGAGGCTAGGAAGAGAGAGG AAGAGGAGGCTAGAAAGAAAGAGGAAGAAGAAGCTAGGAAAAGAGAAGAGGAGGAAGAGAGGGAAAGGGAGGAAGAGGAGGCTAGGAAGAGAGAAGAAGC GGAGAGGGAACGACAAGAAGAGGAAGAAAAACAGAGGAGGGAGGAGGAGGAAGAGGAGGCTAGGAAAAGAGAAGAGGAGGAGAGGGAAAGGGAGGAAGAG GAGGCTAGGAAGAGAGAAGAAGAGGAGAGGAGAGAACAGGAAGAAGCGGAGAGGGAACGACAAGAAGAGGAAGAAAAACAGAGGAGGGAGGAGGAGGAAG AGGAGGCTAGGAAAAGAGAAGAAGCGGAGAGGGAACGACAGGAAGAGGAAGAAAAACAGAGGAGGGAGGAGGAGGAAGAGGAGGCTAGGAAAAGAGAAGA GGAGCAGAGGGAAAGGGAGGAAGAGGAGAGAAGAGAACAGGAAGAAGAGGAGAGGGAACGACAAGAAGAGGAAGAAAAACAGAGGAGAGAAGAGGAGGAG CAGCAAGAAGAGGCTAGGAGAAGAGAAGAAAAAAAGAAGCGACAAGAGAAGCAAAGACAACGAGAAGAGACCCCCAGGAGGGAGCATGAAGAGGCAAGGA GACAAGAAGAAGAAAGGCAAAAGCGACGCTGGAAAGAAGAAGAAAGGGCTAAGGAAAGGGAAAGACGTGAAGGAGGGGGAGAACAACCAGAGGAACAAGA AGTGGAAGCTAGAAAAGAAGATCAAGAGCGTAAAGGTGATGAAGGGAAAGGAAGAAGAGCTTTAAGGAATCCTTGGAAGCTCTAA
AA sequence Show only first row Show all	>Potri.007G029100.2 pacid=42765601 polypeptide=Potri.007G029100.2.p locus=Potri.007G029100 ID=Potri.007G029100.2.v4.1 annot-version=v4.1 MLQKVPLLSLLFLGLLLCLSIHVEAFSEDVSAWERPYLVRRGHRRSLVVTEYGEISAAEISSGTKGPYHIQFITLEPNSLLLPVLLHADMVFYVHTGNGK LSWTDGREMKRMNLRRGDVYRLQAGSVFFVRSNLDSERQKMRIHAIFSNTDEDIYEPSIGAYSSVSDLVLGFDRKVLQEAFKVPEEVLEELTSATKPPAV VHAVTKDQKSVYWELEDRMLDFLIGNKHKKTKETKTFNILDAKPDFENCNGWSLTVDKHSLKSLSDSNIGIFMVNLTKGSMMGPHWNPMATEIAIVLHGR GMVRVICHSTANESECKNMRFKVKEGDVFAVPRFHPMAQISFNNDSFVFMGFSTSTKRNHPQFLTGKSSILQILDRGILAVSFNVTNTTMDQLLNAQEEA LILDCTSCAEIEENKMKEEFEKEKQEEEARKREEEEARKKEEEEARKREEEEEREREEEEARKREEAERERQEEEEKQRREEEEEEARKREEEEREREEE EARKREEEERREQEEAERERQEEEEKQRREEEEEEARKREEAERERQEEEEKQRREEEEEEARKREEEQREREEEERREQEEEERERQEEEEKQRREEEE QQEEARRREEKKKRQEKQRQREETPRREHEEARRQEEERQKRRWKEEERAKERERREGGGEQPEEQEVEARKEDQERKGDEGKGRRALRNPWKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18540			RmlC-like cupins superfamily p...		Potri.007G029100 [exp]	0	1
AT1G52690		LEA7	LATE EMBRYOGENESIS ABUNDANT 7,...		Potri.001G173200 [exp]	3.74	0.9323
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Potri.002G206100 [exp]	4.24	0.9137
AT5G51760		AHG1	ABA-hypersensitive germination...		Potri.015G133900 [exp]	4.89	0.9058
AT2G21490		LEA	dehydrin LEA (.1)		Potri.004G158500 [exp]	6.00	0.8876
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.001G151500 [exp]	8.06	0.8632	EXLB1.2
AT4G31830			unknown protein		Potri.006G183800 [exp]	8.48	0.8766
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.009G118700 [exp]	9.16	0.8671
AT2G36640		ATECP63	embryonic cell protein 63 (.1)		Potri.015G060600 [exp]	11.66	0.8492	ATECP63.1
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Potri.012G141300 [exp]	13.49	0.8591
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G020367 [exp]	14.49	0.9001

Compare expression of checked genes

Potri.007G029100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.