Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36730 302 / 2e-101 bZIP GBF1 G-box binding factor 1 (.1.2) AT1G32150 147 / 1e-40 bZIP AtbZIP68 basic region/leucine zipper transcription factor 68 (.1) AT2G35530 134 / 2e-35 bZIP AtbZIP16 basic region/leucine zipper transcription factor 16 (.1) AT2G46270 97 / 3e-22 bZIP GBF3 G-box binding factor 3 (.1.2) AT4G01120 89 / 2e-19 bZIP ATBZIP54, GBF2 BASIC REGION/LEUCINE ZIPPER MOTIF 5, G-box binding factor 2 (.1) AT2G18160 62 / 2e-11 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT3G30530 61 / 7e-11 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT1G75390 59 / 3e-10 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT5G38800 58 / 5e-10 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT3G49760 56 / 2e-09 bZIP ATBZIP5 basic leucine-zipper 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G126000 [exp] 516 / 0 AT4G36730 322 / 2e-109 G-box binding factor 1 (.1.2) Potri.003G097600 [exp] 128 / 1e-33 AT2G35530 447 / 1e-156 basic region/leucine zipper transcription factor 16 (.1) Potri.001G136000 [exp] 125 / 2e-32 AT2G35530 424 / 3e-147 basic region/leucine zipper transcription factor 16 (.1) Potri.002G167100 [exp] 94 / 3e-21 AT2G46270 355 / 1e-120 G-box binding factor 3 (.1.2) Potri.014G094200 [exp] 91 / 4e-20 AT2G46270 340 / 2e-114 G-box binding factor 3 (.1.2) Potri.010G135200 [exp] 59 / 7e-10 AT3G30530 131 / 2e-38 basic leucine-zipper 42 (.1) Potri.007G006900 [exp] 59 / 8e-10 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.004G111100 [exp] 58 / 8e-10 AT3G30530 156 / 9e-49 basic leucine-zipper 42 (.1) Potri.008G113400 [exp] 57 / 1e-09 AT1G13600 139 / 2e-41 basic leucine-zipper 58 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014324 [exp] 341 / 2e-116 AT4G36730 291 / 2e-97 G-box binding factor 1 (.1.2) Lus10026033 [exp] 320 / 1e-107 AT4G36730 273 / 4e-90 G-box binding factor 1 (.1.2) Lus10041720 [exp] 318 / 1e-107 AT4G36730 271 / 1e-89 G-box binding factor 1 (.1.2) Lus10024030 [exp] 314 / 6e-106 AT4G36730 267 / 3e-88 G-box binding factor 1 (.1.2) Lus10005146 [exp] 88 / 7e-19 AT2G46270 340 / 1e-113 G-box binding factor 3 (.1.2) Lus10003034 [exp] 87 / 9e-19 AT2G46270 333 / 3e-111 G-box binding factor 3 (.1.2) Lus10029101 [exp] 61 / 1e-10 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10013059 [exp] 60 / 4e-10 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10011722 [exp] 58 / 1e-09 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10037750 [exp] 51 / 9e-08 AT5G49450 85 / 1e-21 basic leucine-zipper 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor CL0018 [poplar] [flax] PF07777 [poplar] [flax] MFMR G-box binding protein MFMR
Representative CDS sequence Show only first row Show all	>Potri.007G029400.2 pacid=42766538 polypeptide=Potri.007G029400.2.p locus=Potri.007G029400 ID=Potri.007G029400.2.v4.1 annot-version=v4.1 ATGGGGACAGGGGAAGAAAGCACTCCTGCTAAGCCTTCCAAGCCCACATCTTCAAATCAGGAAATACCCACAACACCTTTGTATCCTGATTGGTCAAGTT CTATGCAGGCTTATTATGGTGCCGGAGCTACCCCGCCTCCCTTTTATGCCTCAACCGTAGCTTCACCAGCCTCTCACCCCTATCTATGGGGAAGCCAGCA TCCTTTAATCCCACCTTACGGAACTCCAGTTCCATACCCAGCTTTATATCCTGCAGGAGGAGTGTATGCTCATCCGAACATGGCCCCGACACCAAATTCA GCCCAGGCAAATATAGAGATGGAAGGAAAGGTCCCCAATGGAAAGGACCGTGCTTCAGCTAAAAAAACCAAGGGAACTTCTGGAGGCAAAGCAGGGGAGA GCGGAAAGGCAGCTTCTGGTTCTGGAAATGATGGTGCCTCCCAAAGTGCTGAAAGTGGTAGTGATGGCTCATCTGATGCCAGTGACGAGAATACTAACCA GCAGGAATATGGTGCAAGCAAGAAGGGAAGCTTCAACCAGATGCTTGCAGATGCTAATGCACAAAGTACCTCAGCTGGAGCAAATATCCAAGCTTCTGTG CCTGGGAAACCTGTGGCGTCTATGCCTGCAACTAATTTAAACATTGGGATGGACTTATGGAATGCATCTTCTGCTGCTGGAGCTACAAAAATGAGACCAA ATCCATCTTGTGCCACATCTGGAGTTGTTCCTGCTGGATTGCCTGAACAATGGATTCAAGATGAACGTGAATTGAAAAGACAGAAGAGGAAACAATCTAA TAGAGAGTCAGCCAGAAGGTCCAGATTACGCAAACAGGCAGAGTGCGAGGAGCTACAAGCCAGGGTACAGAATTTGAGCAGTGACAATAGCAATCTCAGA AATGAATTGCAGAGTCTCTCTGAAGAATGCAATAAGCTTAAATCCGAAAATGATTCCATTAAGGAGGAGTTGACTCGGTTGTATGGACCAGAAGTTGTAG CTAAACTTGAACAGAGCAACCCTGCTTCGGTTCCAGAGTCTCATGGTGGTGAGGGAGACAGTTGA
AA sequence Show only first row Show all	>Potri.007G029400.2 pacid=42766538 polypeptide=Potri.007G029400.2.p locus=Potri.007G029400 ID=Potri.007G029400.2.v4.1 annot-version=v4.1 MGTGEESTPAKPSKPTSSNQEIPTTPLYPDWSSSMQAYYGAGATPPPFYASTVASPASHPYLWGSQHPLIPPYGTPVPYPALYPAGGVYAHPNMAPTPNS AQANIEMEGKVPNGKDRASAKKTKGTSGGKAGESGKAASGSGNDGASQSAESGSDGSSDASDENTNQQEYGASKKGSFNQMLADANAQSTSAGANIQASV PGKPVASMPATNLNIGMDLWNASSAAGATKMRPNPSCATSGVVPAGLPEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQNLSSDNSNLR NELQSLSEECNKLKSENDSIKEELTRLYGPEVVAKLEQSNPASVPESHGGEGDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Potri.007G029400 [exp]	0	1
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Potri.013G061200 [exp]	1.41	0.8716
AT4G28240			Wound-responsive family protei...		Potri.019G116300 [exp]	2.00	0.8360
AT5G59080			unknown protein		Potri.009G038300 [exp]	6.00	0.8123
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Potri.018G129700 [exp]	7.34	0.7718
AT2G46110		PANB1, KPHMT1	ketopantoate hydroxymethyltran...		Potri.014G090500 [exp]	8.77	0.7918
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.003G192100 [exp]	10.24	0.8201
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Potri.013G006600 [exp]	10.48	0.7938
AT2G24360			Protein kinase superfamily pro...		Potri.018G001900 [exp]	10.95	0.7832
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Potri.005G126000 [exp]	11.09	0.8349
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Potri.014G071100 [exp]	12.24	0.7356

Compare expression of checked genes

Potri.007G029400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.