Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36740 208 / 2e-68 HD HB-5, ATHB40 homeobox protein 40 (.1) AT2G18550 196 / 1e-63 HD HB-2, ATHB21 homeobox-2, homeobox protein 21 (.1) AT5G66700 155 / 1e-47 HD ATHB53, HB53, HB-8 HOMEOBOX-8, ARABIDOPSIS THALIANA HOMEOBOX 53, homeobox 53 (.1) AT3G01470 84 / 1e-19 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT4G40060 78 / 3e-17 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT5G65310 77 / 8e-17 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT2G22430 77 / 1e-16 HD ATHB6 homeobox protein 6 (.1) AT1G69780 76 / 2e-16 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT5G03790 74 / 6e-16 HD LMI1, ATHB51 LATE MERISTEM IDENTITY1, homeobox 51 (.1) AT2G46680 72 / 2e-15 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G126100 [exp] 301 / 4e-105 AT2G18550 201 / 2e-65 homeobox-2, homeobox protein 21 (.1) Potri.002G100600 [exp] 88 / 5e-21 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.015G065400 [exp] 84 / 3e-19 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 81 / 3e-18 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.005G071900 [exp] 79 / 3e-17 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.007G097100 [exp] 78 / 5e-17 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.006G117700 [exp] 77 / 5e-17 AT5G03790 181 / 5e-57 LATE MERISTEM IDENTITY1, homeobox 51 (.1) Potri.010G093400 [exp] 77 / 7e-17 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.011G114500 [exp] 75 / 7e-17 AT5G53980 113 / 2e-32 homeobox protein 52 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041719 [exp] 159 / 4e-49 AT4G36740 192 / 9e-62 homeobox protein 40 (.1) Lus10024031 [exp] 156 / 1e-47 AT4G36740 189 / 2e-60 homeobox protein 40 (.1) Lus10037200 [exp] 83 / 8e-19 AT1G69780 319 / 2e-109 Homeobox-leucine zipper protein family (.1) Lus10035583 [exp] 81 / 9e-19 AT5G03790 146 / 2e-43 LATE MERISTEM IDENTITY1, homeobox 51 (.1) Lus10036730 [exp] 82 / 2e-18 AT1G69780 325 / 9e-112 Homeobox-leucine zipper protein family (.1) Lus10022225 [exp] 81 / 2e-18 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10030493 [exp] 81 / 4e-18 AT1G69780 288 / 1e-97 Homeobox-leucine zipper protein family (.1) Lus10012845 [exp] 80 / 4e-18 AT1G69780 280 / 1e-94 Homeobox-leucine zipper protein family (.1) Lus10008795 [exp] 79 / 1e-17 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10042180 [exp] 78 / 4e-17 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Potri.007G029500.1 pacid=42765410 polypeptide=Potri.007G029500.1.p locus=Potri.007G029500 ID=Potri.007G029500.1.v4.1 annot-version=v4.1 ATGAGTTACAAGCTTGAAGATCACATGGCACTCACCTCTCAATTGTACCCAGGTGTATTCACTCAAATGGTTCCACAACAAGGTGAATCTAAACCACGAC GAAGGCGAAAGAAGAACAAAGACGCCGATCTTAGTGGGGCAAGGAAGAGGAAACTTAATGAGGAGCAAGTTAATCTCCTTGAAATGAATTTTGGTAATGA ACATAAGTTGGAATCTGAGAGGAAAGACAAGCTTGCTTCAGAGTTGGGACTCGATCCTCGCCAAGTTGCCGTTTGGTTTCAAAACCGGAGGGCAAGGTGG AAGAACAAGAAGCTAGAGGAGGAGTACACAAAGTTGAAGACATCCCATGAAAACATAGTTGTCGAGAAATGCCAGCTTGAATCCGAGGTTTTAAAGCTCA AGGAACAACTCTCTGAAGCAGAAAAGGAGATCCAAAGGCTGTCAGACCGTATTGATGGGGTTTCCACTAATAGTCCTAGTTCATCCTTGTCGATGGCTAT GGACCCCCCATTTCTTGGAGAGTTTGCAATGGAAGGATATGAAGATGCTGCTTTCTACATGCCACCAGAAAACAATTACATTCCTGGCATGGAATGGATT AATCTGTATATGTAA
AA sequence Show only first row Show all	>Potri.007G029500.1 pacid=42765410 polypeptide=Potri.007G029500.1.p locus=Potri.007G029500 ID=Potri.007G029500.1.v4.1 annot-version=v4.1 MSYKLEDHMALTSQLYPGVFTQMVPQQGESKPRRRRKKNKDADLSGARKRKLNEEQVNLLEMNFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARW KNKKLEEEYTKLKTSHENIVVEKCQLESEVLKLKEQLSEAEKEIQRLSDRIDGVSTNSPSSSLSMAMDPPFLGEFAMEGYEDAAFYMPPENNYIPGMEWI NLYM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Potri.007G029500 [exp]	0	1
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Potri.008G065400 [exp]	1.73	0.9534
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.001G431700 [exp]	2.64	0.9583
					Potri.012G023601 [exp]	2.82	0.9422
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.001G436800 [exp]	4.47	0.9535
AT2G29490		GST19, ATGSTU1	GLUTATHIONE S-TRANSFERASE 19, ...		Potri.010G061100 [exp]	4.47	0.9401
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.001G437000 [exp]	6.92	0.9527
AT5G50200		WR3, ATNRT3.1, ...	WOUND-RESPONSIVE 3, NITRATE TR...		Potri.015G085100 [exp]	7.34	0.9200	Pt-WR3.2
					Potri.015G098650 [exp]	11.31	0.9242
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.016G023300 [exp]	12.48	0.9349	CADL3
AT4G37580		UNS2, COP3, HLS...	UNUSUAL SUGAR RESPONSE 2, HOOK...		Potri.001G044100 [exp]	13.41	0.9303

Compare expression of checked genes

Potri.007G029500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.