Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	APP1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36760 1015 / 0 ATAPP1 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) AT3G05350 523 / 3e-178 Metallopeptidase M24 family protein (.1) AT1G09300 45 / 0.0001 Metallopeptidase M24 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021400 [exp] 533 / 0 AT3G05350 1025 / 0.0 Metallopeptidase M24 family protein (.1) Potri.007G030050 [exp] 488 / 2e-171 AT4G36760 397 / 4e-136 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.018G145576 [exp] 208 / 1e-64 AT4G36760 166 / 1e-49 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.T045100 [exp] 208 / 1e-64 AT4G36760 166 / 1e-49 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.018G145584 [exp] 101 / 5e-26 AT4G36760 85 / 2e-21 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Potri.006G149500 [exp] 43 / 0.0007 AT4G29490 767 / 0.0 Metallopeptidase M24 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041716 [exp] 1040 / 0 AT4G36760 987 / 0.0 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Lus10024034 [exp] 997 / 0 AT4G36760 924 / 0.0 ARABIDOPSIS THALIANA AMINOPEPTIDASE P1, aminopeptidase P1 (.1) Lus10029923 [exp] 543 / 0 AT3G05350 978 / 0.0 Metallopeptidase M24 family protein (.1) Lus10004479 [exp] 509 / 2e-174 AT3G05350 910 / 0.0 Metallopeptidase M24 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [poplar] [flax] Peptidase_M24 Metallopeptidase family M24 PF16188 [poplar] [flax] Peptidase_M24_C C-terminal region of peptidase_M24 CL0356 [poplar] [flax] AMP_N-like PF16189 [poplar] [flax] Creatinase_N_2 Creatinase/Prolidase N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G029700.4 pacid=42766462 polypeptide=Potri.007G029700.4.p locus=Potri.007G029700 ID=Potri.007G029700.4.v4.1 annot-version=v4.1 ATGTCAGAAATACTAGCTTCTTTAAGGTCTCTAATGGCGTCTCATTCTCCACCGCTTGATGCCTTAGTTGTTCCATCTGAAGATTATCATCAGAGTGAGT ATGTGTCTGCACGTGACAAGCGACGCGAATTCGTTTCTGGCTTTACAGGAAGCGCTGGTTTGGCGCTTGTTACAAAGAAGGATGCCCGGCTGTGGACGGA TGGGCGGTATTTCTTACAGGCAACGCAGCAACTTAGTGTTGAGTGGACGTTAATGCGTATGGGAGAGGATCCTGGTTTTGATGCATGGGTGGCTGATAAT CTACCTGTGGAGGCGGCTATTGGGATTGATCCATGGTGTGTATCGGTAGATACTGCGCAAAGGTGGCAACTGACTTTTGCGAAGAAACAACAGAAACTGG TTCAGACTGAAACCAATTTGGTTGATGAGGTCTGGAAAAGTCGTCCGCCAGCGGAAATAAATCCAGTTGTGGTTCATCCGATAGAGTTTACTGGATGTTC GGTTGCACAGAAGTTGAAGGATTTGAGAGCGAAACTCAAAAATGAGAAAACTCGTGGCATAGTTGTCACAACACTTGATGAGGTAGCTTGGTTGTATAAT ATTCGTGGGACTGATGTGTCCTATTGTCCAGTTGTTCATGCGTTTGCTATAATAACATCTAATTCAGCTTTCCTTTATGTGGACAAGAAGAAGGTGTCTG CTGAGACAAACCGTTATATGGAGGAGAATGGAATTGATGTTCGAGATTACGCTGATGTGAGTTCAGATGTGGTCTTGCTTGCATCTGATCAGCTTGACTC GACATCTGAAGTCAAAGGAACTGATACCGCCACAGGAAATGGTACAACTGAAGCAGAAGGAAATAATATTGACCGTATATGGGTTGACCCTGGTTCATGC TGCTATGCTTTATATTCAAAATTGAATTCTGAGAAGGTGCACATGCAACAATCTCCTTTGGCCCTTGCAAAAGCTCTAAAGAACCCTGTTGAGTTGGATG GCTTAAAGAAGGCACACGTTCGGGATGGTGCTGCTGTTGTGCAATATCTTGTCTGGTTAGATAAGCAGATGCAGGAATCATATGGGGCTTCAGGCTACTT CTTGGAGGGGCAAAGTGCAAATAAGAAAAAGGATTTGGGAGCTATAAAACTGACAGAGGTAACTGTTAGTGATAAGCTGGAGGGTTTCCGAGCATCGAAA GAGCATTTTAGGGGGTTAAGTTTCCCAACAATTTCATCAGTCGGTCCAAATGCAGCAATCATCCATTATTCTCCACATGCTGAAACATGTGCAGAGCTCA ATCCAGACAGCATCTATCTGTTTGATTCTGGAGCACAGTATCTGGATGGAACAACTGACATAACTCGCACGGTCCATTTTGGGAATCCATCAACGCATGA AAAAGCAAGCTACACTGCTGTTCTCAAGGGTCACATTGCTTTGGGTAATGCCTGTTTTCCCAATGGAACTAATGGTCATGCCCTCGATATTCTTGCTCGA ATTCCTTTATGGAAGGATGGTCTTGATTATCGACATGGCACTGGTCATGGTATTGGATCATACCTAAATGTACATGAAGGACCTCATTTAATTAGTTTCA GACCACATGCTCGTAATGTGCCACTGCAATCTTCCATGACTGTAACGGATGAACCTGGATACTATGAGGATGGGAACTTCGGGATAAGATTGGAGAATGT GCTTATTGTCAAGGAGGCTGATACAAAATTCAATTTTGGTGACAAGGGCTACTTATCATTCGAGCACATAACATGGGCACCATATCAAACGAAGATGATT GACTTGACCCTTCTAGGTCCTGAAGAGATAAATTGGCTTAACATCTACCATGGGAGATGTAGGGATATTCTGGCCCCTTATTTGGATGAATCTGAGATGG CATGGCTGAATAAAGCTACTGAACCCATAGGGGTGTGA
AA sequence Show only first row Show all	>Potri.007G029700.4 pacid=42766462 polypeptide=Potri.007G029700.4.p locus=Potri.007G029700 ID=Potri.007G029700.4.v4.1 annot-version=v4.1 MSEILASLRSLMASHSPPLDALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALVTKKDARLWTDGRYFLQATQQLSVEWTLMRMGEDPGFDAWVADN LPVEAAIGIDPWCVSVDTAQRWQLTFAKKQQKLVQTETNLVDEVWKSRPPAEINPVVVHPIEFTGCSVAQKLKDLRAKLKNEKTRGIVVTTLDEVAWLYN IRGTDVSYCPVVHAFAIITSNSAFLYVDKKKVSAETNRYMEENGIDVRDYADVSSDVVLLASDQLDSTSEVKGTDTATGNGTTEAEGNNIDRIWVDPGSC CYALYSKLNSEKVHMQQSPLALAKALKNPVELDGLKKAHVRDGAAVVQYLVWLDKQMQESYGASGYFLEGQSANKKKDLGAIKLTEVTVSDKLEGFRASK EHFRGLSFPTISSVGPNAAIIHYSPHAETCAELNPDSIYLFDSGAQYLDGTTDITRTVHFGNPSTHEKASYTAVLKGHIALGNACFPNGTNGHALDILAR IPLWKDGLDYRHGTGHGIGSYLNVHEGPHLISFRPHARNVPLQSSMTVTDEPGYYEDGNFGIRLENVLIVKEADTKFNFGDKGYLSFEHITWAPYQTKMI DLTLLGPEEINWLNIYHGRCRDILAPYLDESEMAWLNKATEPIGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Potri.007G029700 [exp]	0	1	APP1.2
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.009G110500 [exp]	3.16	0.8686
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Potri.012G081600 [exp]	6.32	0.8334
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Potri.015G078900 [exp]	9.48	0.8345	PtrcGrx_C1.1
AT1G73040			Mannose-binding lectin superfa...		Potri.012G140001 [exp]	12.00	0.8296
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Potri.006G213900 [exp]	14.28	0.8341
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Potri.006G110100 [exp]	17.05	0.8390
AT1G72690			unknown protein		Potri.017G119600 [exp]	17.23	0.8233
AT3G03990			alpha/beta-Hydrolases superfam...		Potri.014G016500 [exp]	18.89	0.7538
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.005G245000 [exp]	21.42	0.8125
AT3G46020			RNA-binding (RRM/RBD/RNP motif...		Potri.001G236200 [exp]	22.64	0.8062

Compare expression of checked genes

Potri.007G029700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.