Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50740 496 / 1e-173 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT5G26310 474 / 1e-164 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT5G66690 471 / 2e-163 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT2G18570 429 / 3e-147 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 414 / 1e-141 UDP-Glycosyltransferase superfamily protein (.1) AT2G18560 360 / 2e-121 UDP-Glycosyltransferase superfamily protein (.1) AT4G01070 357 / 1e-118 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 344 / 5e-114 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 318 / 5e-104 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 252 / 2e-78 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029800 [exp] 943 / 0 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1) Potri.007G030400 [exp] 629 / 0 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.007G030500 [exp] 515 / 0 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G041800 [exp] 366 / 2e-122 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096100 [exp] 358 / 3e-119 AT4G01070 610 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G138200 [exp] 351 / 2e-116 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G168600 [exp] 346 / 6e-115 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096000 [exp] 327 / 2e-107 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041900 [exp] 301 / 6e-98 AT4G01070 295 / 2e-95 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041715 [exp] 480 / 5e-167 AT3G50740 478 / 6e-166 UDP-glucosyl transferase 72E1 (.1) Lus10024035 [exp] 477 / 1e-165 AT3G50740 486 / 3e-169 UDP-glucosyl transferase 72E1 (.1) Lus10041713 [exp] 456 / 1e-157 AT2G18570 415 / 3e-141 UDP-Glycosyltransferase superfamily protein (.1) Lus10024037 [exp] 456 / 5e-157 AT2G18570 412 / 3e-140 UDP-Glycosyltransferase superfamily protein (.1) Lus10029452 [exp] 366 / 2e-122 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 363 / 4e-121 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 337 / 2e-111 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 337 / 3e-111 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003944 [exp] 332 / 6e-109 AT4G01070 400 / 1e-135 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10039588 [exp] 311 / 4e-101 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.007G030300.1 pacid=42766294 polypeptide=Potri.007G030300.1.p locus=Potri.007G030300 ID=Potri.007G030300.1.v4.1 annot-version=v4.1 ATGCAAAACACAAAACCTCATGCCGCCTTGTTATCTAGCCCTGGCATGGGACACCTTATCCCTGTCCTTGAACTAGGCAAACGCCTGCTCACTAACCATG GCTTCACTGTCACAATCTTTGTTGTCACAACAGACAATTCCCTTTCAAAATCCCAGCTTCTCAAGCAATCACCTTGTCCTGACCTGCTTAACATTGTCTT GCTACCACCAGTGGACGTTTCTAGCCTAATCACCCCAACTACTGGCATCCTAGCACAACTAGCAATTATGATGCGGGAGGCTTTGCCAAAACTACGGTCT GCAATACTAGCCATGGAGTTTTGTCCAACGGTTCTTATTGTTGATTTTTTTGGAACCGAAGCTATGGTGATTGCTGATGAGTTTAACATGTTGAAGTACG CGTTCATGACTTCCACTGCATGGTTTCTTGCACTTACATTACATATGCCAACTATTGATAAGGCAATTGAAGACAACCATGTTAAGAACCAACAAGCTCT ATTGATTCCCGGCTGCAAATCACTTGAGTTCAGGGATACGTTTGAACCAGTTTTAGACAGAAATGATCAGATGTACATAGAGTACAAACGCATGGGGGTT GAGATGCAGAAGTTTGATGGTATTTTGGTGAATACATGGCAGGATTTGGAGGGCACAACACTTGGTGCACTTGAAGATGAAAAGAGGTTAGGGAGGGTGG CTCAGGTTCCGATCTACCCCGTTGGGCCACTGGTTAGAGCAATTACACCAGGTCCAAAGAGTGAGATGTTAGAGTGGCTAGACATGCAGCCTATTGAGTC TGTGATTTATGTCTCGTTTGGGAGCGGGGGAGCCCTATCAGCCAGGCAAACAACCGAGCTAGCTTGTGGGCTAGAGTCAAGTGGCCAGAGGTTTATCTGG GTGGTCCGTCCACCCATAGAAGGCGATTCAGCAGCAACCGTATTTAAGACAAACCACAGAACTGACGACACCCCAGATTTCTTGCCTGATGGATTCTTGA CCCGAACCCGTAAGATGGGACTAGTTGTCCCAATGTGGGCACCTCAAACCGAAATCTTGAGCCATCCATCAGTTGGGGGATTCGTATCACACTGCGGGTG GAATTCAACCCTGGAAAGTATAGTTAATGGAGTTCCCATGATTACATGGCCACTCTATGCAGAGCAGGGGATGAATGCTGCAATGCTTTCCGAGGATATA GGAGTGGCCATTCGTTCGAAGTCATTGCCAGCAAAGGAAGTGGTGGCTCGAGAAGAGATAGAGACAATGGTTCGAACGATCATGGACAAAGGTGATGCAA GAAGGGCAAGGGCCAAGACTCTAAAATCAAGTGCTGAAAAAGCTCTGAGCAAGGGTGGCTCCTCTTACAATTCACTTGCTCATGTGGCAAATGACTGTGA GACGGCCTTCAAATACCTGAAAGCAAAGGCTCAAGGTGCATAG
AA sequence Show only first row Show all	>Potri.007G030300.1 pacid=42766294 polypeptide=Potri.007G030300.1.p locus=Potri.007G030300 ID=Potri.007G030300.1.v4.1 annot-version=v4.1 MQNTKPHAALLSSPGMGHLIPVLELGKRLLTNHGFTVTIFVVTTDNSLSKSQLLKQSPCPDLLNIVLLPPVDVSSLITPTTGILAQLAIMMREALPKLRS AILAMEFCPTVLIVDFFGTEAMVIADEFNMLKYAFMTSTAWFLALTLHMPTIDKAIEDNHVKNQQALLIPGCKSLEFRDTFEPVLDRNDQMYIEYKRMGV EMQKFDGILVNTWQDLEGTTLGALEDEKRLGRVAQVPIYPVGPLVRAITPGPKSEMLEWLDMQPIESVIYVSFGSGGALSARQTTELACGLESSGQRFIW VVRPPIEGDSAATVFKTNHRTDDTPDFLPDGFLTRTRKMGLVVPMWAPQTEILSHPSVGGFVSHCGWNSTLESIVNGVPMITWPLYAEQGMNAAMLSEDI GVAIRSKSLPAKEVVAREEIETMVRTIMDKGDARRARAKTLKSSAEKALSKGGSSYNSLAHVANDCETAFKYLKAKAQGA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Potri.007G030300 [exp]	0	1
					Potri.017G127501 [exp]	7.14	0.7652
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Potri.002G108800 [exp]	8.24	0.7652
					Potri.003G194950 [exp]	9.21	0.7652
AT4G34880			Amidase family protein (.1)		Potri.004G169400 [exp]	11.22	0.7361
AT4G27290			S-locus lectin protein kinase ...		Potri.010G018400 [exp]	12.84	0.6899
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.018G043500 [exp]	14.69	0.7038
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G172866 [exp]	15.49	0.6982
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120401 [exp]	18.97	0.5581
AT4G27300			S-locus lectin protein kinase ...		Potri.010G018050 [exp]	19.74	0.6532
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G064900 [exp]	19.89	0.6640

Compare expression of checked genes

Potri.007G030300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.