Plant FIBer expression Database

Potri.007G030800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G36790 633 / 0 Major facilitator superfamily protein (.1)
AT2G18590 464 / 1e-160 Major facilitator superfamily protein (.1)
AT1G78130 308 / 1e-99 UNE2 unfertilized embryo sac 2, Major facilitator superfamily protein (.1)
AT5G10190 306 / 7e-99 Major facilitator superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G091800
[exp]
307 / 8e-99 AT5G10190 643 / 0.0 Major facilitator superfamily protein (.1)
Potri.007G091700
[exp]
306 / 2e-98 AT5G10190 660 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041712
[exp]
665 / 0 AT4G36790 663 / 0.0 Major facilitator superfamily protein (.1)
Lus10026037
[exp]
627 / 0 AT4G36790 639 / 0.0 Major facilitator superfamily protein (.1)
Lus10038972
[exp]
323 / 3e-105 AT5G10190 720 / 0.0 Major facilitator superfamily protein (.1)
Lus10027264
[exp]
137 / 4e-37 AT5G10190 337 / 1e-114 Major facilitator superfamily protein (.1)
Lus10027265
[exp]
60 / 1e-10 AT5G10190 129 / 3e-36 Major facilitator superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF07690 MFS_1 Major Facilitator Superfamily
Representative CDS sequence
>Potri.007G030800.1 pacid=42766398 polypeptide=Potri.007G030800.1.p locus=Potri.007G030800 ID=Potri.007G030800.1.v4.1 annot-version=v4.1
ATGGGCCTTAAACGGACCCCTTACAGATTTGGTTCTTCTTCCCTTCGAGCGCCATTCAAGTCTTTGATTCCCAGAACTATTGATGCCATGAAAGGAAGAA
AGATTTTGGGGGTTTCTCTTTCTATCTTTCTTATAAACATGGCTGCTATAATGGAGCGCGCTGATGAAAATCTCCTTCCTGCTGTTTATAAAGAAGTTAG
TGAAGCTTTTAATGCTGGACCATCTGATCTGGGGTATCTTACTTTCATAAGGAACTTTGTGCAGGGACTGTCATCACCATTGGCAGGTATTTTAGTTATA
AACCATGCCCGTCCCACGGTTCTTGCAATGGGAACTTTGTGTTGGGCCTTATCAACTGCTGCGGTGGGTGCAAGCCAGCATTTCTCGCAAGCTGCATTCT
GGAGAGCAGTAAATGGCTTTGGACTGGCAATTGTAATACCAGCATTGCAATCTTTCATTGCTGATAGCTATCAGGATGGTGTGAGGGGTACTGGATTTGG
ATTGCTAAGCTTTATTGGTAACTTGGGTGGTATAGGTGGTGGTGTTCTGGCAACAGTTATGGCTGGTCAGCAGTATTGGGGTGTACAAGGATGGCGTTTT
GCCTTCATCATGATGGCATCATTGAGTTTACTAATAGGGTTACTTGTTTTCTTATTTGTGGTTGATCCAAGGAAAACAATTGGTGTCAACCGTGACACCA
GTGAGAATTTTGAAAGAGATGAACTGGTAGAAAAGGGAAATTCTTATGAATTATCAATTTGGACAGAGTCCTGGACAGCAACAAAAGCCGTTATGAAAGT
GAAAACATTTCAGATAATTGTCCTGCAGGGCATTGTTGGTTCCCTGCCATGGACTGCAATGGTGTTTTTTACCATGTGGTTTGAACTGATTGGTTTTAAT
CATAACAAAACAGCAGCTCTCCTAAGTTTCTTTGCTGTTGGGTGTTCATTGGGGTCCCTCCTTGGTGGCATAATAGCTGATCGAATGTCACATATTTACC
CTCACTCTGGCCGTATCATGTGTGCCCAGTTCAGTGCCTTCATGGGCATCCCATTCTCTTGGTTTCTTCTCAAAGTGATTCCACAATCAGTAAGCAGCTA
TTCCACCTTTGCTGTTACCCTTTTCATGATGGGCCTAACAATCAGCTGGAATGGTACTGCTGTCAATGCCCCAATATTCGCTGAGGTGGTGCCTGTAAAA
CACCGGACTATGATTTATGCATATGATCGTGCTTTTGAAGGATCGTTCTCTTCTTTTGCGGCTCCATTGGTCGGAATCCTTTCAGAGCAGATGTTTGGTT
ATGATTCAAAGTCTGTTGATCCAATTAAAGGTTCTGTACGAGAAGCTTCTGCACTGTCTAAAGGGCTTCTTTCGATGATGGCAATTCCATTTGGTTTGTG
TTGCTTGTTTTACACTCCATTGTATAGATATTTTAGGCAAGACCGTGAAAATGCAAGAATGGCGGGTTCAAAAGCATTAGAGATCATGTAA
AA sequence
>Potri.007G030800.1 pacid=42766398 polypeptide=Potri.007G030800.1.p locus=Potri.007G030800 ID=Potri.007G030800.1.v4.1 annot-version=v4.1
MGLKRTPYRFGSSSLRAPFKSLIPRTIDAMKGRKILGVSLSIFLINMAAIMERADENLLPAVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGILVI
NHARPTVLAMGTLCWALSTAAVGASQHFSQAAFWRAVNGFGLAIVIPALQSFIADSYQDGVRGTGFGLLSFIGNLGGIGGGVLATVMAGQQYWGVQGWRF
AFIMMASLSLLIGLLVFLFVVDPRKTIGVNRDTSENFERDELVEKGNSYELSIWTESWTATKAVMKVKTFQIIVLQGIVGSLPWTAMVFFTMWFELIGFN
HNKTAALLSFFAVGCSLGSLLGGIIADRMSHIYPHSGRIMCAQFSAFMGIPFSWFLLKVIPQSVSSYSTFAVTLFMMGLTISWNGTAVNAPIFAEVVPVK
HRTMIYAYDRAFEGSFSSFAAPLVGILSEQMFGYDSKSVDPIKGSVREASALSKGLLSMMAIPFGLCCLFYTPLYRYFRQDRENARMAGSKALEIM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G36790 Major facilitator superfamily ... Potri.007G030800
[exp]
0 1
AT1G49960 Xanthine/uracil permease famil... Potri.009G086800
[exp]
1.00 0.9763
AT5G44670 Domain of unknown function (DU... Potri.003G156600
[exp]
2.44 0.9701
Potri.003G083000
[exp]
2.44 0.9760
Potri.002G193400
[exp]
3.46 0.9334
AT4G09960 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-... Potri.019G077200
[exp]
3.60 0.9333 AGL11.1
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Potri.019G120800
[exp]
3.87 0.9525 FLA14.5
AT1G33720 CYP76C6 "cytochrome P450, family 76, s... Potri.001G109300
[exp]
4.89 0.9598
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Potri.019G121100
[exp]
4.89 0.9405
AT3G18380 SHH2 SAWADEE homeodomain homolog 2,... Potri.001G373300
[exp]
5.29 0.9300
AT3G42640 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase... Potri.018G112400
[exp]
7.07 0.9373 Pt-AHA6.3

Potri.007G030800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.