Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50760 459 / 7e-163 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 431 / 6e-152 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT4G02130 371 / 3e-128 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT3G62660 370 / 8e-128 GATL7 galacturonosyltransferase-like 7 (.1) AT1G70090 371 / 1e-127 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT3G28340 370 / 2e-127 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT3G06260 369 / 2e-127 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT1G02720 362 / 1e-124 GATL5 galacturonosyltransferase 5 (.1.2) AT1G24170 363 / 2e-124 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G13250 358 / 4e-123 GATL3 galacturonosyltransferase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G128000 [exp] 585 / 0 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1) Potri.014G040300 [exp] 490 / 6e-175 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G132900 [exp] 473 / 2e-168 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G116900 [exp] 373 / 4e-129 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.010G129400 [exp] 373 / 4e-129 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.010G038300 [exp] 374 / 6e-129 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.008G018100 [exp] 372 / 8e-129 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.008G192600 [exp] 368 / 2e-126 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.002G200200 [exp] 362 / 2e-124 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016301 [exp] 484 / 9e-173 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10018801 [exp] 476 / 1e-169 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10032728 [exp] 475 / 4e-169 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10041489 [exp] 387 / 1e-134 AT1G13250 491 / 2e-175 galacturonosyltransferase-like 3 (.1) Lus10034274 [exp] 379 / 2e-131 AT1G13250 489 / 9e-175 galacturonosyltransferase-like 3 (.1) Lus10010727 [exp] 375 / 1e-129 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10034012 [exp] 374 / 2e-129 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10012765 [exp] 373 / 6e-129 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10029215 [exp] 368 / 1e-126 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10002440 [exp] 367 / 1e-125 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.007G031700.1 pacid=42766595 polypeptide=Potri.007G031700.1.p locus=Potri.007G031700 ID=Potri.007G031700.1.v4.1 annot-version=v4.1 ATGTTCAAACTAGGACTAAAATCACCTCCACCATCATCCTCACCACACCACCTCCTCCCCATCCTACTCCTCTCTATAATCATAATCAATTCCACCGCCA CAGCCACCGCCAATGGTAAAGGATTCAAAGAAGCCCCACAATTCTACAACTCTCCATCATGTCCTTCAATCTCTACACAAGACATGTGCTCACAACAAGC AGTGCATGTGGCCATGACTCTTGACTTTCCTTATCTCCGCGGCACTATGGCAGCTATTTTTTCCATCCTCCAACACTCTTCCTGCCCGGAAAACATTCGT TTCCACTTCATTTCCTCCCCCTCCTCTACCCACCTCCATGAAACCATTACCTCCTCCTTCCCTTACCTCCGTTCCCAAATCTACTCTTTCGATACCAACC CCGTCTCCGGCCTCATCTCCACCTCCATCCGCTCGGCCCTTGACTCTCCTCTTAACTATGCTCGCAATTATCTAGCCAACATCCTCCCTCCTTGCGTCCC AAAAGTCGTCTACTTGGACTCCGATTTAGTCCTAGTAGACGACATTGCATCACTAGCAGCTACACCTCTCGGTACCGGAACAGTGTTAGCAGCACCAGAA TATTGTAATGCTAACTTTACCACATACTTTACGCCCACATTCTGGGCAAACCCTATGCTTTCCTTAACATTTTCCGGACGCAATGCCTGTTATTTTAACA CAGGAGTGATGGTCATTGATTTAGAGAGATGGAGAGAAGGAGATTACACAACAAAAATAGTTGAATGGATGGAGCTTCAAAAGAGGATGAGGATTTACGA GCTGGGTTCGTTGCCTCCGTTCTTGTTAGTTTTTGCAGGGAATATTGCTGCCGTGGATCATAAATGGAATCAACATGGTCTTGGTGGGGATAATTTCAGA GGTCTTTGTAGGAATTTGCATCCTGGTCCGGTTAGTCTTTTGCATTGGAGTGGTAAAGGGAAGCCTTGGGTTCGCTTAGATGCCAACAGGCCATGCCCTT TAGATGCATTATGGGCTCCTTACGATCTCTTGCGGACACCGTTTGCTCTTGAATCTTAG
AA sequence Show only first row Show all	>Potri.007G031700.1 pacid=42766595 polypeptide=Potri.007G031700.1.p locus=Potri.007G031700 ID=Potri.007G031700.1.v4.1 annot-version=v4.1 MFKLGLKSPPPSSSPHHLLPILLLSIIIINSTATATANGKGFKEAPQFYNSPSCPSISTQDMCSQQAVHVAMTLDFPYLRGTMAAIFSILQHSSCPENIR FHFISSPSSTHLHETITSSFPYLRSQIYSFDTNPVSGLISTSIRSALDSPLNYARNYLANILPPCVPKVVYLDSDLVLVDDIASLAATPLGTGTVLAAPE YCNANFTTYFTPTFWANPMLSLTFSGRNACYFNTGVMVIDLERWREGDYTTKIVEWMELQKRMRIYELGSLPPFLLVFAGNIAAVDHKWNQHGLGGDNFR GLCRNLHPGPVSLLHWSGKGKPWVRLDANRPCPLDALWAPYDLLRTPFALES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50760		GATL2	galacturonosyltransferase-like...		Potri.007G031700 [exp]	0	1
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Potri.007G107200 [exp]	2.44	0.9248
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.002G071900 [exp]	4.47	0.9242
AT3G58600			Adaptin ear-binding coat-assoc...		Potri.013G117900 [exp]	4.58	0.9221
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Potri.009G061500 [exp]	4.89	0.9122
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.017G130600 [exp]	5.00	0.9176
AT4G38350			Patched family protein (.1.2)		Potri.002G009600 [exp]	7.00	0.8623
AT1G17030			unknown protein		Potri.004G062000 [exp]	7.48	0.9044
AT2G04850			Auxin-responsive family protei...		Potri.002G222600 [exp]	7.93	0.9035
AT2G20780		AtPLT4	Major facilitator superfamily ...		Potri.004G039100 [exp]	8.66	0.8934
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.006G035400 [exp]	9.38	0.9207	TUB17,TUB6.1

Compare expression of checked genes

Potri.007G031700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.