Plant FIBer expression Database

Potri.007G031800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G36850 508 / 0 PQ-loop repeat family protein / transmembrane family protein (.1)
AT2G41050 244 / 7e-78 PQ-loop repeat family protein / transmembrane family protein (.1)
AT4G20100 138 / 6e-38 PQ-loop repeat family protein / transmembrane family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G023400
[exp]
278 / 2e-90 AT2G41050 396 / 1e-136 PQ-loop repeat family protein / transmembrane family protein (.1)
Potri.006G025100
[exp]
162 / 2e-46 AT2G41050 210 / 2e-65 PQ-loop repeat family protein / transmembrane family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022491
[exp]
499 / 1e-175 AT4G36850 496 / 2e-174 PQ-loop repeat family protein / transmembrane family protein (.1)
Lus10016795
[exp]
489 / 2e-173 AT4G36850 508 / 0.0 PQ-loop repeat family protein / transmembrane family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0141 MtN3-like PF04193 PQ-loop PQ loop repeat
Representative CDS sequence
>Potri.007G031800.1 pacid=42765597 polypeptide=Potri.007G031800.1.p locus=Potri.007G031800 ID=Potri.007G031800.1.v4.1 annot-version=v4.1
ATGTCTCTAGCTTACTGTGTTAAGGAACAGAAACCTTGTGTTCGCTGGGTAGAGAAGTACTTCAAGGATTGCCTTTGCAGTCTAAAAGATGAGTTCTCTT
TCACTTTTGGGCTCATTAGTCTAGTGTGTTGGGGAGTTGCAGAAATCCCTCAAATCATCACCAACTTTCGCACAAAGTCCAGCCATGGAGTTTCTCTTGC
TTTTCTCCTCACTTGGGTTGCCGGAGACATCTTTAATCTGGTGGGCTGCTTACTGGAGCCAGCAACGTTGCCAACCCAATATTACACTGCTGTGCTCTAC
ACAACAAGTACTGTAGTACTAGTGTTGCAGGGTCTATACTACGATCATGTCTACAGGTGGTGTAGATGCAGGAAAACCAAAGATAATCAACAAGTTGATG
ATGACCAAGACCCATTGAAGCCCAAGTCAGCTGATCGTTCAGGCATTTCCATACCCAAGGCTTCTCCAAGAGCAACCCCTCGTAGAGATTTTTATTATAT
GTCAGCTAGATCTTTGGCCGGTAGTAATACTCCACCATTTAGAAGTTACCTTAGGGCAGCCAAAAGTGGTCCATCAGCTGTGGGACTTGACAATGAATCA
TCCTCAGATGATGAGGCTGCAGCCCCAGTTTCGGTTAGTAACACTGTTAGTCAGCCTAGACCAATTCCACGATCGGCTGGCTATGGAACATTTCTTGCTA
CATCCCTCAACTTGCCTCTGCAAAGCAAGGCTTTGACACAAGCCTACATTGGATACACTGGACGAAGACTTTTACATGAAGGTGGCGGCACGGATCACAG
TGCGTTTGGACAATGGTTGGGATGGCTAATGGCAGCTATCTACATGGGTGGCCGGATCCCCCAAATATGGTTAAATATTAAAAGAGGGAGTGTTGAGGGC
TTGAATCCTCTCATGTTCGTCTTTGCGTTGGTGGCCAACCTCACTTATGTGCTAAGTATTGTTGCTAGAACCACTGAGTGGGATAGCATCAAACCGAATA
TGCCATGGTTGCTGGATGCTGCAGTCTGCGTGGCGCTCGACTTTTTTATCATTTTGCAGTACATTTACTACCGATACTTCCTCGAGAAAAGGGTGGACCA
TGAAGAATGCTACTACGGAGACTACGTGGATGCTAGTAAAGCTGCTATTTCTTGA
AA sequence
>Potri.007G031800.1 pacid=42765597 polypeptide=Potri.007G031800.1.p locus=Potri.007G031800 ID=Potri.007G031800.1.v4.1 annot-version=v4.1
MSLAYCVKEQKPCVRWVEKYFKDCLCSLKDEFSFTFGLISLVCWGVAEIPQIITNFRTKSSHGVSLAFLLTWVAGDIFNLVGCLLEPATLPTQYYTAVLY
TTSTVVLVLQGLYYDHVYRWCRCRKTKDNQQVDDDQDPLKPKSADRSGISIPKASPRATPRRDFYYMSARSLAGSNTPPFRSYLRAAKSGPSAVGLDNES
SSDDEAAAPVSVSNTVSQPRPIPRSAGYGTFLATSLNLPLQSKALTQAYIGYTGRRLLHEGGGTDHSAFGQWLGWLMAAIYMGGRIPQIWLNIKRGSVEG
LNPLMFVFALVANLTYVLSIVARTTEWDSIKPNMPWLLDAAVCVALDFFIILQYIYYRYFLEKRVDHEECYYGDYVDASKAAIS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G36850 PQ-loop repeat family protein ... Potri.007G031800
[exp]
0 1
AT1G02930 ATGST1, GST1, E... EARLY RESPONSIVE TO DEHYDRATIO... Potri.002G207479
[exp]
2.64 0.7984
AT4G27870 Vacuolar iron transporter (VIT... Potri.012G004000
[exp]
8.12 0.7600
AT1G64690 BLT BRANCHLESS TRICHOMES, branchle... Potri.003G147900
[exp]
8.77 0.7311
AT4G28240 Wound-responsive family protei... Potri.019G116300
[exp]
12.72 0.7302
AT1G14900 HMGA high mobility group A (.1) Potri.017G129400
[exp]
20.83 0.7218 HMGA901
AT3G63240 DNAse I-like superfamily prote... Potri.005G212700
[exp]
22.89 0.7427
AT3G03990 alpha/beta-Hydrolases superfam... Potri.014G016500
[exp]
24.45 0.7039
AT3G61060 ATPP2-A13 phloem protein 2-A13 (.1.2) Potri.014G075800
[exp]
27.98 0.7010
AT1G65810 P-loop containing nucleoside t... Potri.008G143450
[exp]
35.28 0.7381
AT5G65140 TPPJ trehalose-6-phosphate phosphat... Potri.005G166700
[exp]
37.34 0.6616

Potri.007G031800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.