Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37220 71 / 2e-15 Cold acclimation protein WCOR413 family (.1) AT3G50830 56 / 8e-10 ATCOR413-PM2, COR413-PM2 cold-regulated 413-plasma membrane 2 (.1) AT2G15970 46 / 2e-06 ATCYP19, FL3-5A3, ATCOR413-PM1, WCOR413-LIKE, COR413-PM1 CYCLOPHILLIN 19, ARABIDOPSIS THALIANA COLD-REGULATED413 PLASMA MEMBRANE 1, cold regulated 413 plasma membrane 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G149100 [exp] 66 / 2e-13 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Potri.007G033801 [exp] 63 / 1e-12 AT3G50830 282 / 1e-97 cold-regulated 413-plasma membrane 2 (.1) Potri.009G109800 [exp] 57 / 3e-10 AT3G50830 238 / 4e-80 cold-regulated 413-plasma membrane 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027946 [exp] 68 / 4e-14 AT3G50830 247 / 5e-84 cold-regulated 413-plasma membrane 2 (.1) Lus10021020 [exp] 68 / 4e-14 AT4G37220 258 / 3e-88 Cold acclimation protein WCOR413 family (.1) Lus10027945 [exp] 64 / 6e-13 AT4G37220 245 / 4e-83 Cold acclimation protein WCOR413 family (.1) Lus10012035 [exp] 64 / 7e-13 AT4G37220 242 / 6e-82 Cold acclimation protein WCOR413 family (.1) Lus10012034 [exp] 64 / 1e-12 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Lus10016782 [exp] 56 / 5e-10 AT3G50830 277 / 9e-96 cold-regulated 413-plasma membrane 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05562 [poplar] [flax] WCOR413 Cold acclimation protein WCOR413
Representative CDS sequence Show only first row Show all	>Potri.007G032000.1 pacid=42765365 polypeptide=Potri.007G032000.1.p locus=Potri.007G032000 ID=Potri.007G032000.1.v4.1 annot-version=v4.1 ATGGCTTCAAGTTTTAATGTATATAACTCAACATCATTAGCAGTAGCAGAAGCTATAGAATCAAGATCTAGCTGGGCTCGAGCTAGTTTTCAATGGGGTG GAACCATCTTTACTATATTCTTGTTGATCCTGAACCGAGTAGGACGGAAATCATCTGTGCAGACTACCCTTCTTGTATTCTATTTGCTCACAAGTTTCCC AACAGTGTTGTTCAAAGTTGTAAGAGGACAATTTGGTTACTGGATTGCTTTTCTTGCTATTGCGGCAAACCTATTCTTTCCTGAAACCTTTCCAGTTTCT CGTTTTATCCTATTTGTCATCTCGCCTGACCGGCTGGTAGATGGATTGCGCAATAGCATTGCTGGTGCTATCTTTTGTCTCCTGATTGGAATTTCATCTG TCATAATGGAGATTCGAGAAATTGCAGGAAACAGGATTCTTGAATGTAGTTTTCTCTGCTGGGGTTATTGTCTTGCTATATCCTTCTTGTTCTTCTTCAC AATCAAGTATCTATGCTTAGGAACTTGGTAG
AA sequence Show only first row Show all	>Potri.007G032000.1 pacid=42765365 polypeptide=Potri.007G032000.1.p locus=Potri.007G032000 ID=Potri.007G032000.1.v4.1 annot-version=v4.1 MASSFNVYNSTSLAVAEAIESRSSWARASFQWGGTIFTIFLLILNRVGRKSSVQTTLLVFYLLTSFPTVLFKVVRGQFGYWIAFLAIAANLFFPETFPVS RFILFVISPDRLVDGLRNSIAGAIFCLLIGISSVIMEIREIAGNRILECSFLCWGYCLAISFLFFFTIKYLCLGTW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37220			Cold acclimation protein WCOR4...		Potri.007G032000 [exp]	0	1
AT2G44930			Plant protein of unknown funct...		Potri.017G019700 [exp]	8.00	0.7050
AT3G53850			Uncharacterised protein family...		Potri.006G090400 [exp]	12.04	0.6753
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.013G028300 [exp]	12.64	0.7010	Pt-HPT2.2
AT2G33630			NAD(P)-binding Rossmann-fold s...		Potri.002G005100 [exp]	18.16	0.6414
AT5G05330			HMG-box (high mobility group) ...		Potri.019G049100 [exp]	22.18	0.6850
AT1G02180			ferredoxin-related (.1)		Potri.002G136000 [exp]	30.26	0.6760
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Potri.004G183300 [exp]	43.63	0.5817
					Potri.014G005200 [exp]	60.56	0.6395
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Potri.014G145200 [exp]	77.36	0.5871
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.008G013300 [exp]	84.48	0.5851

Compare expression of checked genes

Potri.007G032000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.