Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23770 514 / 1e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G33580 410 / 3e-134 Protein kinase superfamily protein (.1) AT3G01840 201 / 9e-56 Protein kinase superfamily protein (.1) AT1G51940 201 / 1e-55 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 195 / 1e-53 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT3G58690 172 / 3e-47 Protein kinase superfamily protein (.1) AT4G05200 174 / 3e-46 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT2G07180 168 / 2e-45 Protein kinase superfamily protein (.1.2) AT4G35600 167 / 2e-45 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT4G21230 169 / 2e-44 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G128200 [exp] 978 / 0 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 476 / 5e-160 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.005G128300 [exp] 436 / 1e-144 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 419 / 1e-138 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 269 / 1e-80 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 267 / 4e-80 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G332800 [exp] 266 / 5e-79 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.009G010300 [exp] 253 / 5e-75 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032300 [exp] 228 / 1e-65 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019661 [exp] 754 / 0 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10000577 [exp] 744 / 0 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022488 [exp] 448 / 2e-149 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 430 / 1e-141 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10016299 [exp] 345 / 2e-109 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016794 [exp] 256 / 4e-79 AT2G23770 219 / 2e-66 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016793 [exp] 238 / 3e-69 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10041323 [exp] 235 / 4e-68 AT2G23770 202 / 2e-56 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037389 [exp] 227 / 3e-65 AT2G33580 202 / 1e-56 Protein kinase superfamily protein (.1) Lus10041171 [exp] 220 / 7e-63 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.007G032100.1 pacid=42765879 polypeptide=Potri.007G032100.1.p locus=Potri.007G032100 ID=Potri.007G032100.1.v4.1 annot-version=v4.1 ATGAATTTCAATGTGCAATTATATGAAGAATCTTTCTTCTTTTTCAAGAAAAAAGTTCCTCGTGCAACGTCTCTGCTTTGCCTGAATAGATATCCATTCC TCTTGAACTGTATTTTGCCATTCACACAATTAGTTCTTTCCCAAATCAACATGAGCTTCCGTTCTGTTGTTTCTCCTTTTGCTCTCTTCATTCTTTATTG CTGTTCTTTGATTCAAGCTCAGCAGCCTTACGTGGGGAAAGGTACAACAAAATGTTCAAACACAGAAAATTCCGCTCTGGGGTATTCTTGCAATGGCCTG AACAAGAGTTGCCAAGCTTATCTGATCTTCAGATCCCAACCTCCTTACAGTACTGTTGCCTCCATATCTACTCTTTTGGGTTCAGACCCATCTCAGCTCT CTCAAATAAATTCAGTTTCTGAGACTACATCATTTCCAACAAACCAGTTGGTGCTGGTTCCTGTCAACTGCTCATGTTCAGGCGATTATTTTCAGGCAAA CGCATCTTATATTGTTCAATCAGGTAACACTCCTTTCTTGATTGCTAATAACACTTATCAAGGCCTCTCAACCTGTCAAGCTATCCGGAATGAAAAAGGT ACACGAACTGTCAATATATTTGCTGGTGAAACACTCACTGTTCCTCTTAGATGTGCCTGTCCTACAAAGAACCAGAGTGATTTAGGTATCAGGTATCTGT TAAGTTACTTAGTCACATGGGGCGATACAGTTTCAATTGCTGGTGTACGATTTGGTGCAGATATCGGGAGAGCTCTTGAAGCTAATGAAATCAGTGAGAA AAATCCCACGATTTACCCCTTCACAACACTCCTAATTCCTTTAAAAAACCCACCAACAAGTTCACAAACTGTAGTGCCACCGCCACCTCCAGCTTCACCT TCACCTTCACCTCCATCACCGTCTCCAAACTCCGACAAAAGCGCAAACAAAACATGGATTTATGTTTTCGTTGGGGCTGTTGGAGGAATTGTTCTTACAC TAGTCATTGGAACCATTATTTTCTTCATGCTCTTCCGAAAAAGTAAGAAGCAACCGGGTCCAATTATCGTGTCACAAAGCTTTGAGGCACATGAGAAACC ACTCAACAGGAAGTTGGATGAAGAACCTCAGGATTTGTTAGAGAGTGTTTATAGCATAGCTCAATCCATCAAAGTCTACAACTATGAAGATCTGAAAGCT GCAACAGATAACTTCAGTCCCAGTTTTTGGATCAAAGGGTCTGTTTTTCGTGGCCTAATCAATGGTGATTTCGCTGCCATTAAGAAGATGAACGGAGACG TGTCCAAGGAGATAGATTTATTGAATAAGATCAACCACTCTAATCTAATTCGCCTCTCCGGTGTTTGTTTCAATGATGGGCATTGGTACCTGGTTTACGA GTATGCTGCCAATGGACCTTTGAGTGATTGGATTTATGTTAGCAGTAACGAAGGAAAGTTTTTGAAATGGACACAAAGGATACAGATTGCTACGGATGTA GCTACAGGGCTTAACTATCTGCATAGTTTTACTAACTATCCTCATGTCCACAAGGATATAAAGAGCAGCAACATACTTCTTGATAAAGATTTAAGGGCTA AGATTGCGAACTTTTCCCTGGCAAGGTCAACAGATGGGCCGGAAGGTGAATTTGCATTGACAAGGCACATCGTTGGGACTAAAGGTTACATGGCTCCCGA GTACTTGGAAAATGGTATTATCTGTACAAAACTTGATGTCTATGCATTTGGAATTCTCACACTGGAGATAATGACTGGGAAAGAAGTTGCTGCTTTATAC AGAGAGGAAAACAGGGAGCTATCTGATGTTTTAAATGGTGTTCTTTCTGAGGAAGGTGGGCTGGAGGAGAGTCTGAGTCAACTTATTGATCCTTCAATGC AAGGGAATTATCCTTCAGGACTCGCCGTTTTAATGGTCAGATTGATTGATAGTTGCTTGAACAAAAATCCAGCAGGTCGCCCAGCCATGGATGAAATCGT GCAGTCTCTCTCAGGAATTTTGATTACTTCTCTGGCCTGGGAATTGTCAAACAACACATCTAGCTACCATAGTTCGAATTAG
AA sequence Show only first row Show all	>Potri.007G032100.1 pacid=42765879 polypeptide=Potri.007G032100.1.p locus=Potri.007G032100 ID=Potri.007G032100.1.v4.1 annot-version=v4.1 MNFNVQLYEESFFFFKKKVPRATSLLCLNRYPFLLNCILPFTQLVLSQINMSFRSVVSPFALFILYCCSLIQAQQPYVGKGTTKCSNTENSALGYSCNGL NKSCQAYLIFRSQPPYSTVASISTLLGSDPSQLSQINSVSETTSFPTNQLVLVPVNCSCSGDYFQANASYIVQSGNTPFLIANNTYQGLSTCQAIRNEKG TRTVNIFAGETLTVPLRCACPTKNQSDLGIRYLLSYLVTWGDTVSIAGVRFGADIGRALEANEISEKNPTIYPFTTLLIPLKNPPTSSQTVVPPPPPASP SPSPPSPSPNSDKSANKTWIYVFVGAVGGIVLTLVIGTIIFFMLFRKSKKQPGPIIVSQSFEAHEKPLNRKLDEEPQDLLESVYSIAQSIKVYNYEDLKA ATDNFSPSFWIKGSVFRGLINGDFAAIKKMNGDVSKEIDLLNKINHSNLIRLSGVCFNDGHWYLVYEYAANGPLSDWIYVSSNEGKFLKWTQRIQIATDV ATGLNYLHSFTNYPHVHKDIKSSNILLDKDLRAKIANFSLARSTDGPEGEFALTRHIVGTKGYMAPEYLENGIICTKLDVYAFGILTLEIMTGKEVAALY REENRELSDVLNGVLSEEGGLEESLSQLIDPSMQGNYPSGLAVLMVRLIDSCLNKNPAGRPAMDEIVQSLSGILITSLAWELSNNTSSYHSSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23770			protein kinase family protein ...		Potri.007G032100 [exp]	0	1
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Potri.017G045400 [exp]	2.64	0.7500
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Potri.003G081500 [exp]	4.89	0.7440
AT2G42040			unknown protein		Potri.016G059400 [exp]	11.22	0.6996
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Potri.002G248900 [exp]	19.44	0.6794
AT3G03280			unknown protein		Potri.006G105600 [exp]	20.39	0.7196
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G138700 [exp]	21.21	0.7228
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.015G023200 [exp]	21.90	0.6353
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.009G034800 [exp]	31.30	0.7172
AT5G60800			Heavy metal transport/detoxifi...		Potri.004G214700 [exp]	31.30	0.6272
					Potri.008G140866 [exp]	32.75	0.6620

Compare expression of checked genes

Potri.007G032100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.