Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33580 247 / 8e-73 Protein kinase superfamily protein (.1) AT3G21630 201 / 2e-56 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT2G23770 193 / 1e-53 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G01840 168 / 2e-44 Protein kinase superfamily protein (.1) AT1G51940 148 / 1e-37 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT4G02010 142 / 1e-35 Protein kinase superfamily protein (.1) AT1G67720 141 / 6e-35 Leucine-rich repeat protein kinase family protein (.1) AT5G25930 141 / 7e-35 Protein kinase family protein with leucine-rich repeat domain (.1) AT3G19300 140 / 1e-34 Protein kinase superfamily protein (.1) AT4G29990 136 / 2e-33 Leucine-rich repeat transmembrane protein kinase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G128401 [exp] 481 / 1e-168 AT2G33580 196 / 1e-57 Protein kinase superfamily protein (.1) Potri.005G128501 [exp] 376 / 6e-128 AT2G23770 71 / 4e-14 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.010G078700 [exp] 385 / 3e-126 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 375 / 3e-122 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.014G040000 [exp] 250 / 1e-74 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 247 / 5e-73 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.005G128200 [exp] 243 / 1e-71 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 236 / 2e-68 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G332800 [exp] 225 / 1e-64 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016793 [exp] 681 / 0 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10022487 [exp] 670 / 0 AT5G66631 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019662 [exp] 365 / 4e-121 AT2G33580 198 / 3e-57 Protein kinase superfamily protein (.1) Lus10021889 [exp] 310 / 6e-98 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10000577 [exp] 244 / 8e-72 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022488 [exp] 239 / 5e-70 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 234 / 7e-68 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10039406 [exp] 226 / 5e-67 AT2G33580 229 / 4e-68 Protein kinase superfamily protein (.1) Lus10019661 [exp] 229 / 3e-66 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10041171 [exp] 214 / 2e-61 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [poplar] [flax] LysM PF01476 [poplar] [flax] LysM LysM domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.007G032300.1 pacid=42765135 polypeptide=Potri.007G032300.1.p locus=Potri.007G032300 ID=Potri.007G032300.1.v4.1 annot-version=v4.1 ATGGCCATGGCAATTTCTTTGCTCTCTTCCTTTTTCACTCAAGCTCTATTTTTCTTGGTTCTTGTATTTTTCTCCACCTATGTCACAGCACAAGCTCCAC CCGGCACAAATTTTTCATGCCCTGTTGATTCACCGACCTCATGTCCTACTTATATTAGTTACCTTGCCCAGCCACCAGATTTTTTGGACCTCGGAAAGAT TTCTCATCTATTTGGGATCAGTCGTACGCTAATAGCAAGTGCCAGTAACCTGGTGTCTGAGGACACCCCATTATTTCCAAATCAACTCTTGCTTGTACCT ATACGTTGTGGTTGCACTGGTAGCCAATCTTTTGTCAATATCACCTACCAAATCCAGCAAGGTGATAGCATCTACTCGGTTTCAACTATTTCATTTGAGA ACCTCACCCGTTGGCAAGAGGTGGAAGCTTTGAACCGCAGTCTGACTCCAACCCTCTTGCATGCTGGTGACGAGGTTATATTTCCTCTGTTCTGTAAGTG CCCTTCAAGGACTCATTTGGAGAATGGGATTGAACATCTCATTACTTATGTGTGGCAACCTGGTGATGATCTCAAGAAAGTAGCTGCTATGCTTAATGCA TCTGAACGTAATATTGTGATTGAAAACAACTATGATAACTTTAATGCTGCAGTCTATAACCCGATAGTGATCCCTGTGTCCAAGTTACCAGTTCTCTCTC AACCATACCTCACTCCTGAAAGAAGAGGATCTAAGCATCTTTGGATTGTCATTGTTGCTGCAAGCATAGCAAGCACTTTTTTTACCTGTCCTTTGGTTGC TTTTCTGATCCACAAGCGTTGTTCATATAAGGCAACCAAAGCTTTGGATCGTACTGGTTCCTGTTTGGAGACCAGCGATGTCATTCAAACGAAGGAACCT GTGAAATTTGAGAGTTTTGAGGCAAAGATCAAGCCGGATAAGCTGCTTCCAGGGGTTTTAGGTTGTCTGGACAAGTCAATCATTTATGAGGTTAAAGCAA TTATGGAGGGAACCATGGATCTACACGAACACTACAAGATAGGAGGATCAGTATATAGGGCCAACATCAATGGCTGTGTCTTAGCAGTGAAGAAAACCAA GGATGATGTCACGGAAGAGCTAAAGATTTTGCAGAAAGTCAGTCATGCAAATCTGGTGAAACTAATGGGGATGTCATCTGAATCTGATAGAGAAGGCAAT CGCTTCTTGGTCTATGAATATGCAGAAAACGGGTCACTGGACAAGTGGTTGCATCCCAAGTCTGAATCTTCCTCAAGCTCCGTGGGTTTCCTCACTTGGA AGCAAAGGATGCAAGTAGCACTAGATGTGGCCAACGGCCTGCAATACTTGCATGAACATACTCAACCAAGAACCGTTCACAAGGATATTCGAACGAGTAA TATTCTTCTCGATTCCACATTTCGGGCAAAGATAGCAAATTTCTCAATGGCTAGAGCTGCCACAGACTCGATGATGCCTAAAGATGATGTATTTGATTTT GGAGTTGTTTTGTTAGAGTTGCTTTCTGGAAAGAAGGCCATGGTAACCAAAGAAAAAGGCGAGATTGTTCTGTTGTGCAGGGAAATAAAAGATGTCTTGG AAATGGAAGAGAAAAGAGAGGAGAGGTTAAGAAAGTGGATGGATCCCAACTTGGAGAGATTTTATCCCATTGATAGTGCCATGAGCTTGGCAACCTTGGC TAGGTTGTGCACACTGGAAAAGTCTTCAGAAAGGCCAAGCATGGCAGAGATTGTCTTTAACCTCACAGTTCTCACCCAGTCATCTCCAGAGACATTAGAA AGGTGGACTTCTGAGGTGGAAACGGAAGATTTTACTCGGCTCGTCAGCCCTGTCACAGCTCGTTGA
AA sequence Show only first row Show all	>Potri.007G032300.1 pacid=42765135 polypeptide=Potri.007G032300.1.p locus=Potri.007G032300 ID=Potri.007G032300.1.v4.1 annot-version=v4.1 MAMAISLLSSFFTQALFFLVLVFFSTYVTAQAPPGTNFSCPVDSPTSCPTYISYLAQPPDFLDLGKISHLFGISRTLIASASNLVSEDTPLFPNQLLLVP IRCGCTGSQSFVNITYQIQQGDSIYSVSTISFENLTRWQEVEALNRSLTPTLLHAGDEVIFPLFCKCPSRTHLENGIEHLITYVWQPGDDLKKVAAMLNA SERNIVIENNYDNFNAAVYNPIVIPVSKLPVLSQPYLTPERRGSKHLWIVIVAASIASTFFTCPLVAFLIHKRCSYKATKALDRTGSCLETSDVIQTKEP VKFESFEAKIKPDKLLPGVLGCLDKSIIYEVKAIMEGTMDLHEHYKIGGSVYRANINGCVLAVKKTKDDVTEELKILQKVSHANLVKLMGMSSESDREGN RFLVYEYAENGSLDKWLHPKSESSSSSVGFLTWKQRMQVALDVANGLQYLHEHTQPRTVHKDIRTSNILLDSTFRAKIANFSMARAATDSMMPKDDVFDF GVVLLELLSGKKAMVTKEKGEIVLLCREIKDVLEMEEKREERLRKWMDPNLERFYPIDSAMSLATLARLCTLEKSSERPSMAEIVFNLTVLTQSSPETLE RWTSEVETEDFTRLVSPVTAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33580			Protein kinase superfamily pro...		Potri.007G032300 [exp]	0	1
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039500 [exp]	1.41	0.9947
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.011G010000 [exp]	2.82	0.9890
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.006G239402 [exp]	3.00	0.9874
AT5G10530			Concanavalin A-like lectin pro...		Potri.007G004200 [exp]	4.89	0.9764
AT2G01900			DNAse I-like superfamily prote...		Potri.015G032200 [exp]	6.00	0.9825
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	7.00	0.9816
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.006G248500 [exp]	7.21	0.9851
AT4G22030			F-box family protein with a do...		Potri.004G009000 [exp]	8.12	0.9523
AT2G20030			RING/U-box superfamily protein...		Potri.018G042501 [exp]	9.79	0.9722
AT5G05340			Peroxidase superfamily protein...		Potri.006G107000 [exp]	10.48	0.9670	PRX1.13

Compare expression of checked genes

Potri.007G032300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.