Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50780 654 / 0 unknown protein AT1G63850 332 / 9e-108 BTB/POZ domain-containing protein (.1) AT5G60050 305 / 8e-98 BTB/POZ domain-containing protein (.1) AT2G13690 196 / 6e-56 PRLI-interacting factor, putative (.1) AT3G05675 61 / 1e-09 BTB/POZ domain-containing protein (.1.2) AT2G24692 50 / 5e-08 unknown protein AT4G10800 47 / 1e-05 unknown protein AT3G19920 44 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G129700 [exp] 891 / 0 AT3G50780 623 / 0.0 unknown protein Potri.001G100900 [exp] 348 / 2e-112 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 333 / 1e-106 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.001G233900 [exp] 318 / 7e-103 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G058700 [exp] 211 / 4e-61 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.007G109300 [exp] 206 / 2e-59 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.004G154600 [exp] 80 / 1e-15 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.006G202900 [exp] 60 / 2e-09 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.001G086100 [exp] 47 / 3e-05 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022484 [exp] 703 / 0 AT3G50780 602 / 0.0 unknown protein Lus10016789 [exp] 481 / 5e-169 AT3G50780 408 / 1e-140 unknown protein Lus10024658 [exp] 347 / 1e-112 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10017511 [exp] 336 / 6e-108 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10028772 [exp] 317 / 2e-100 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 296 / 5e-94 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023336 [exp] 289 / 2e-91 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10033484 [exp] 188 / 2e-52 AT2G13690 478 / 7e-164 PRLI-interacting factor, putative (.1) Lus10020892 [exp] 187 / 2e-52 AT2G13690 479 / 3e-164 PRLI-interacting factor, putative (.1) Lus10023573 [exp] 82 / 3e-16 AT1G63850 87 / 8e-18 BTB/POZ domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G032800.1 pacid=42765506 polypeptide=Potri.007G032800.1.p locus=Potri.007G032800 ID=Potri.007G032800.1.v4.1 annot-version=v4.1 ATGGCTGAAATTAGACTTACAAAGGTAGAACAAGGCCAAACCAAGATTAGAAATGTCCCAATTGCCGTAACTCCAGAGGGTTTTTGGTGTTGTCCCTCTC CTGTTGTCTTTCAAAAGACCATTAAAGCTCAAAATCCTTTAAACAAAACCAAACCCTCTTCACCACCACCTAGGACCACCGTCCAAAAGAAACGAACTCC ATTTAATGAGAGAAAGGCACCACCAACTCCATTAAGATCATCAGTTGTTTCTGATGATCAACGAAATTGTGGCTCTGATACACCTGGTGTTAGTGCTTCT ATTGTTAACGAGAGAACTCCCAGGCCCAAGATAGAAAGCTTGCCAAGGAAGGTGGCAATTGAATTTGGGGAACCTGGAACCAGTGATATGAAGGTAGTTT TACTTGGAAAGCAGGGTTTTTGTGTGAAGTTGAGTGTCCACAAGAATGTTCTAGTGGAGAATAGTAGCTTTTTTGCTGATAAGCTTTCTGAAGAGGAGTC TAATCTGTCCTGTCTTGAGATCGATGATTGTGAGGATGTTGAGATATATGTTGAAACTGTGGGACTGATGTATTGCAAGGAGATGAAGCAGAGGTTGATC AAGCAAAGTGTCTCACGCGTGCTTCGAATTCTCAAGGTTGCTGAACTTCTTATCTTCAACACATGCATCCAGTCATGCTTGGAGTATTTGGAAGCAGTTC CATGGATTGGGGATGAAGAAGAAGAGAAAGTGGTCTCCTCGGTTATACGACTCCAGAATGAAGGTATTGGGGTCACACCAGTTTTGAAACGAGTCTCTTC TAATGTTGCTAACCCACCTAAAGATACAATTTCTCACATAATGGAGCTAGTTCTCAAAAGCAATGAGGAGAAAGGCCGACGTGAAATGAAATCCGTAGTC CTGAAGCTCCTTCGGGAGAATAACAGCCTTCCAAGTTACACAGATTCCTCTGACATCTGCAACGATACTATTTATAGCTCCTGCAGAAGTTGCTTGAATT CACTTCTATCTTTGTTTAAGCAAGCTGCTGAACCTGAATTTTCTGATAAGCCTCTAGACAATAAGGAACCTGTGGTAAAGCAAATAGCTCTTGAAGCTGA CAATCTCTCATGGTTGCTTGAGATTTTAGCTGACCGACAAGCAGCAGATGAGTTTGCTCTAATGTGGTCTAGCCAGCAAGAGTTGGCAGCCCTGCATTCA AAGCTACCTATAGTGTCTCGTTACCATGTTAGCTGCATCACATCCAGGTTATTTGTTGGAATTGGAAGAGGGGAGCTGCTACCTTCAAAAGACACTCGTC ACTTGTTGTTACAAACCTGGTTGCAGCCATTAATCAATGACTACAGTTGGTTACAACATGGGTGCAGGTCATTTGATAGAAAGGTAGTGGAGGAAGGCAT CGGGAGGACGATTCTCACACTACCCCTGGAGAACCAACGGAGCATTTTGCTTGCTTGGTTGGGCACTTTCTTAAAGGCTGGTGATAATTGCCCAAATCTT CAGAGAGCCTTTGAGGTCTGGTGGCGAAGGACTTTCATTAGACCATACACGGAAACACAAGGTAGTCCACAACAGCCAGATAGCTCAATGACATCAAGGC AGGAGACTTAA
AA sequence Show only first row Show all	>Potri.007G032800.1 pacid=42765506 polypeptide=Potri.007G032800.1.p locus=Potri.007G032800 ID=Potri.007G032800.1.v4.1 annot-version=v4.1 MAEIRLTKVEQGQTKIRNVPIAVTPEGFWCCPSPVVFQKTIKAQNPLNKTKPSSPPPRTTVQKKRTPFNERKAPPTPLRSSVVSDDQRNCGSDTPGVSAS IVNERTPRPKIESLPRKVAIEFGEPGTSDMKVVLLGKQGFCVKLSVHKNVLVENSSFFADKLSEEESNLSCLEIDDCEDVEIYVETVGLMYCKEMKQRLI KQSVSRVLRILKVAELLIFNTCIQSCLEYLEAVPWIGDEEEEKVVSSVIRLQNEGIGVTPVLKRVSSNVANPPKDTISHIMELVLKSNEEKGRREMKSVV LKLLRENNSLPSYTDSSDICNDTIYSSCRSCLNSLLSLFKQAAEPEFSDKPLDNKEPVVKQIALEADNLSWLLEILADRQAADEFALMWSSQQELAALHS KLPIVSRYHVSCITSRLFVGIGRGELLPSKDTRHLLLQTWLQPLINDYSWLQHGCRSFDRKVVEEGIGRTILTLPLENQRSILLAWLGTFLKAGDNCPNL QRAFEVWWRRTFIRPYTETQGSPQQPDSSMTSRQET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50780			unknown protein		Potri.007G032800 [exp]	0	1
AT3G56810			unknown protein		Potri.016G024600 [exp]	3.00	0.8185
AT2G34190			Xanthine/uracil permease famil...		Potri.004G058800 [exp]	3.60	0.8432
AT5G28150			Plant protein of unknown funct...		Potri.013G038000 [exp]	5.47	0.8062
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.007G007400 [exp]	6.48	0.8021
AT1G79760		DTA4	downstream target of AGL15-4 (...		Potri.011G047800 [exp]	7.34	0.7941	DTA4.2
AT3G54000			unknown protein		Potri.010G195800 [exp]	9.05	0.8208
AT2G40815			Calcium-dependent lipid-bindin...		Potri.019G065500 [exp]	9.38	0.8084
AT1G30280			Chaperone DnaJ-domain superfam...		Potri.011G081500 [exp]	12.24	0.8038
AT2G32280			Protein of unknown function (D...		Potri.007G119600 [exp]	15.96	0.7747
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Potri.011G165200 [exp]	16.30	0.7489

Compare expression of checked genes

Potri.007G032800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.