Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23740 1436 / 0 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT2G22740 144 / 6e-35 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT1G73100 134 / 6e-32 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT2G35160 134 / 2e-31 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT5G13960 128 / 4e-30 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT3G04380 121 / 1e-28 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT5G04940 121 / 8e-28 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT3G03750 111 / 7e-26 SUVR3, SDG20 SET domain protein 20 (.1.2) AT1G04050 115 / 1e-25 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1) AT5G43990 112 / 4e-25 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G129800 [exp] 2654 / 0 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.003G162801 [exp] 150 / 1e-36 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G083100 [exp] 150 / 2e-36 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.016G025300 [exp] 143 / 1e-34 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.006G027600 [exp] 136 / 1e-32 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.002G237950 [exp] 132 / 4e-31 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G192500 [exp] 127 / 2e-29 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.013G064600 [exp] 122 / 2e-29 AT3G03750 258 / 1e-83 SET domain protein 20 (.1.2) Potri.009G138600 [exp] 124 / 8e-29 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016788 [exp] 1919 / 0 AT2G23740 1325 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10022483 [exp] 1586 / 0 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10022482 [exp] 372 / 9e-118 AT2G23740 292 / 9e-90 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10040150 [exp] 163 / 8e-41 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 164 / 1e-40 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 163 / 2e-40 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10002571 [exp] 151 / 1e-37 AT5G13960 444 / 1e-149 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10001798 [exp] 142 / 2e-34 AT5G13960 446 / 8e-150 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10031984 [exp] 139 / 2e-33 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10035115 [exp] 137 / 8e-33 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain PF05033 [poplar] [flax] Pre-SET Pre-SET motif
Representative CDS sequence Show only first row Show all	>Potri.007G033000.1 pacid=42766231 polypeptide=Potri.007G033000.1.p locus=Potri.007G033000 ID=Potri.007G033000.1.v4.1 annot-version=v4.1 ATGGATGTGATTCCTTGTAACGGTGTTCAGTATGTTGGAGAATCTGATTGTGCTCTACAGAGTTCAGGGACAGATTTTACTTATGATGGGGATTCTAGTA ATTTTAAACGTGTAGAACAAGTTGAGATGAATGATGGTAGAGTAAATGACTTATTGCAACATGTAGAAGAGTCTCGTATAGAAAGACAAAGTGAGGGCCA ATGGACGGTGGACAAATTATCCATCTCTAAAGGTGGAGCTTCGTATTCTGATTTTCAGGTAGAGAGCCAAAGGTTATCTTGTGATTCTCAGGATTTTGAA GAAGATGGCATAAATGTACAGGATTATTGCACAGAACCCTGTACAGCCTCCGAAAACTCTAATTTAATTATTGATACCATTGAAAGTGAACCAAACGACT GTAAATACGGAGAGCCATCTCTTTCAGAGCCTCAGTGGCTAGAACATGATGAATCTGTGGCACTATGGGTCAAGTGGAGAGGGAAGTGGCAGGCAGGAAT CAGATGTGCACGGGCAGACTGGCCATTATCAACTTTGAGAGCCAAACCAACTCATGATCGAAAGCAGTATTTTGTGATATTTTTTCCGCACACCAGGAAT TATTCCTGGGCAGATATGATGCTCGTCCAACCGATCAATGAATTTCCAGAGCCTATTGCATATAGGACTCACAAAATTGGACTAAAATTGGTTAAAGATT TGAGTGTTGCACGACGGTTTATAATGAAAAAGTTGGCTGTTGCCATGCTCAATATTGTCGACCAGTTTCATTCCGAGGCTTTAATAGACACAGCTCATGA TGTGATGGTCTGGAAGGAATTTGCCATGGAGGCTTCACGGTGTACTGGTTATTCTGATCTAGGAAGAATGCTTCTGAAACTTCAAAATATGATATTGCAA CGGTACATAAATTCTGATTGGCTGCAGGATTCTTTTCAATCTTGGGTACAGCAATGTCAGGTTGCATGTAGTGCTGAATCAGTTGAATTGCTAAGGGAGG AATTGTCCAATTCTATCCTATGGAATGAAATTGACTCTCTCCGGGATGCATCAGTGCAATCGACTTTGGGATCTGAATGGAAAACCTGGAAGCATGAAGC TATGAAGTGGTTCTCAACCTCTCATCTCATAACAAGTGGCGGAGATATGGAGCAGCAGAACTATGACAGTCTCTCCCCAACCATTAGTCTTCAAGCTAGC AGGAAGAGGCCAAAGCTTGAAGTTCGTCGTGCAGAGACACATGCTTCCCAGATGGAGACAAGCAGTCCGCTTCAAACTATGACTGTTGAAATTGACTCTG AGTTTTTCAGTAATCGAGACACAGTCAATGCTCATACTTTAGAATTAGAGATTTCAAAAGAGGAGGATTCTAGGGAGGTAGCTGCACCTTTAGAATCACC TTGTAGCGTGGCTGATAGATGGGATGAAATTGTAATTGAAGCAGGAAATTCTGAGCTTGTACAGATCAAAGGTGTAGAAATGACTCCTGTTAATGAAGTT TTGGGTAAAAAAAGCATAGAACATGGGAGTAAGAATCGCCAGTGTACAGCTTTTATTGAATCTAAGGGAAGGCAGTGTGTGAGGTGGGCTAATGATGGTG ATGTTTATTGCTGTGTGCATTTGGCCTCTCGTTTTGCTGGAAGCTCCACAAGAGAAGAGGCAAGTCCTCCGGTTCATGGTCCATTGTGTGAAGGTACCAC TGTTCTTGGTACTCGATGCAAGCATCGGTCTCTACCAGGTTCTGCATTCTGTAAGAAACACAGACCCTGGCCGGACACAGAGAAGACCTCAACTTTGCCA GAGGATCCCCATAAGAGAAAACATGAAGAGGTCTTTCCCAGTTCAGACATCACATATTGCAAAGAGATAAAATTGGCTGGACAAGTTGAAAATCCTCTTC GAATGGAACCTGTCTCAGTTATGGATGGAGATGCCTTTCATGGAAGGAACAGCTTAACCGAGAAGCTTGAGCATCCTGACCATGATTGCAATAACTCTGA GATGCTGCACTGCATTGGCTCAAGCTCCCTTGATAGTAGCATCCCTTGTCCTGATAGTCCAAAGCGCTATTCATTGTACTGTGATAAACACATTCCTAGT TGGCTCAAGCGTGCTAGAAATGGTAGAAGTAGGATAATATCAAAAGAAGTGTTTATAGATCTTTTGAAGGACTGTAGCTCATCACAACAGAAATTGCATT TACATCAAGCATGTGAGCTTTTCTACAAGATTTTCAAAAGTATTTTCTCTCTAAGAAACCCTGTTCCTATGGATGTTCAACTTCAGTGGGCCCTCTCTGA AGCTTCTAAAGATTTTAACGTTGGGGAACTCTTGTTGAAGTTGGTTTTAACTGAAAAGGAGAGGCTCAGAAAGTTATGGGGCTTCGCCGTGGAGGAAGAT ATAAAAGTTTCCTCCTCTGTCATAGAAGAACCAGCAGTTTTGCCATTGGCTATTGATGGTAGCCAAGATGATGAAAAATCTATTAGGTGCAAAATTTGCT CTAAAGAGTTTCTCGATGATAAAGAGCTTGGCAACCATTGGATGGACAATCATAAAAAGGAAGCACAGTGGCATTTCAGAGGTCATGCTTGTGCCATCTG CCTGGATTCTTTTACTAACAGAAAAGGTTTGGAAACCCATGTGCAGGAGAGACACCATGTGGAATTTGTTGAACAATGCATGCTTCTACGGTGCATTCCT TGTGGCAGCCACTTTGGGAATACTGAGCAGTTATGGTTGCATGTCCTCTCTGTGCACCCTGCTGATTTCAGGCTGTCAAAAGGTGATCAGCAGCTTAATC TGTCTATGGGTGAGGAGAAAGAGGAATCTCTGCAGAAACTCGAGCTACAAAATGCAGCACCAGTGGTAAATAACTCTGAGAATTTAGGTGGTGTCAGAAA GTACATTTGCAAGTTCTGTGGCCTGAAGTTCGATTTGCTGCCTGATCTTGGCCGCCACCATCAGGCTGCTCATATGGGACCAAATCTATTCAGCTCTCGC CCCCCAAAGAGAGGTGTTCGGTATTATGCATATAGATTAAAATCTGGAAGACTTAGCCGCCCTAGATTTAAGAAAGGTCTGGGGGCACCATATAGCAGCA TCAGGAACAGTGTGACTGCTGGTCTGAAGAAACGAATCCAGGCATCAAAGTCACTTAGCAGTGAGGGACTAAGCATACAGTCTAATTTAATTGAGGCAGG TACTCTTGGTAGACTAGCAGAATCTCAAAGCTCAGAGGTCGCAAAGATATTGTTTTCTGAGGTTCAGAAAACAAAACCTCGGCCTAATAACCATGATATC TTAGCTATTGCACGCTCTGCTTGCTGCAAGGTGAGCCTAAAAGCATCACTGGAGGGGAAATATGGAGTGTTGCCAGAGCGTTTTTATTTGAAGGCAGCCA AGCTCTGCAGTGAGCATAACATTCAAGTACAGTGGCACCAAGAGGAGTTTATCTGTTCCAGAGGATGTAAGAGTTTCAAGGACCCAGGATTATTCTCTCC TTTGATGGCCCTTCCAAATGGTTTAATAAGTAAACAAATTACACATTCATCTGATCATGTAAACAATGAGTGGGAAGTGGACGAGTGCCACTATGTTATT GATGTGCATGATGTTAGAGAAGGGCCTAAGCAAAAGGCTACTGTCTTGTGTAATGACATAAGCTTTGGGAAGGAAACGATACCAGTGGCATGTGTTGTAG ATGAAGATCCCCTGGATTCTCTCCATGTCTTGGCAGATGGTTCTGATGGTCAAATCAGTAATTTCCCCAGGCCCTGGGAAACTTTTACTTATGTAACAGG GCCATTGCTTGATCAATCTGATAGTCTGGGCATTGAGAGTTTGCAATTGGGGTGTTCTTGCCATTATCCAATGTGCTGTCCTGAAACTTGTGATCATGTT TATCTCTTTGACAATGACTATGAAGATGCGAGAGACATATATGGGAATTCCATGCTTGGCAGATTCCCATATGATGATAAAGGGCGGATTGTTTTGGAGG AGGGTTACCTTGTTTATGAGTGTAATAGCATGTGCAGCTGCAATAAAACTTGCCCAAACAGAGTTTTGCAGAATGGAATACGAGTGAAATTGGAAGTCTT CAAAACAGATAATAAGGGTTGGGCAGTCAGGGCAGGGGAACCAATCCTACGTGGTACATTTATATGTGAGTACATTGGGGAGGTTTTAGATGAACAGGAG GCAAACGATAGACGTGACAGGTATGGTAAAGAAGGTTGCAGCTATATGTACAAAATTGATGCTCATACCAATGATATGAGCAGAATGGTTGAAGGACAGT CCCATTATTTTATTGATGCCACAAAGTATGGGAATGTTTCACGGTTCATCAACCACAGCTGCATGCCAAATCTTGCAAACCACCAAGTTCTGGTCAACAG CATGGATTCTCAGCGTGCTCATATCGGTCTTTATGCAAGTCGGGATATATCTTTTGGTGAAGAACTGACATACAACTATCGGTATGAGCTGCTGCCTGGA GAAGGCTATCCTTGCCATTGTGGAGCTTCCAAGTGCCGAGGCCGCCTCTATTAA
AA sequence Show only first row Show all	>Potri.007G033000.1 pacid=42766231 polypeptide=Potri.007G033000.1.p locus=Potri.007G033000 ID=Potri.007G033000.1.v4.1 annot-version=v4.1 MDVIPCNGVQYVGESDCALQSSGTDFTYDGDSSNFKRVEQVEMNDGRVNDLLQHVEESRIERQSEGQWTVDKLSISKGGASYSDFQVESQRLSCDSQDFE EDGINVQDYCTEPCTASENSNLIIDTIESEPNDCKYGEPSLSEPQWLEHDESVALWVKWRGKWQAGIRCARADWPLSTLRAKPTHDRKQYFVIFFPHTRN YSWADMMLVQPINEFPEPIAYRTHKIGLKLVKDLSVARRFIMKKLAVAMLNIVDQFHSEALIDTAHDVMVWKEFAMEASRCTGYSDLGRMLLKLQNMILQ RYINSDWLQDSFQSWVQQCQVACSAESVELLREELSNSILWNEIDSLRDASVQSTLGSEWKTWKHEAMKWFSTSHLITSGGDMEQQNYDSLSPTISLQAS RKRPKLEVRRAETHASQMETSSPLQTMTVEIDSEFFSNRDTVNAHTLELEISKEEDSREVAAPLESPCSVADRWDEIVIEAGNSELVQIKGVEMTPVNEV LGKKSIEHGSKNRQCTAFIESKGRQCVRWANDGDVYCCVHLASRFAGSSTREEASPPVHGPLCEGTTVLGTRCKHRSLPGSAFCKKHRPWPDTEKTSTLP EDPHKRKHEEVFPSSDITYCKEIKLAGQVENPLRMEPVSVMDGDAFHGRNSLTEKLEHPDHDCNNSEMLHCIGSSSLDSSIPCPDSPKRYSLYCDKHIPS WLKRARNGRSRIISKEVFIDLLKDCSSSQQKLHLHQACELFYKIFKSIFSLRNPVPMDVQLQWALSEASKDFNVGELLLKLVLTEKERLRKLWGFAVEED IKVSSSVIEEPAVLPLAIDGSQDDEKSIRCKICSKEFLDDKELGNHWMDNHKKEAQWHFRGHACAICLDSFTNRKGLETHVQERHHVEFVEQCMLLRCIP CGSHFGNTEQLWLHVLSVHPADFRLSKGDQQLNLSMGEEKEESLQKLELQNAAPVVNNSENLGGVRKYICKFCGLKFDLLPDLGRHHQAAHMGPNLFSSR PPKRGVRYYAYRLKSGRLSRPRFKKGLGAPYSSIRNSVTAGLKKRIQASKSLSSEGLSIQSNLIEAGTLGRLAESQSSEVAKILFSEVQKTKPRPNNHDI LAIARSACCKVSLKASLEGKYGVLPERFYLKAAKLCSEHNIQVQWHQEEFICSRGCKSFKDPGLFSPLMALPNGLISKQITHSSDHVNNEWEVDECHYVI DVHDVREGPKQKATVLCNDISFGKETIPVACVVDEDPLDSLHVLADGSDGQISNFPRPWETFTYVTGPLLDQSDSLGIESLQLGCSCHYPMCCPETCDHV YLFDNDYEDARDIYGNSMLGRFPYDDKGRIVLEEGYLVYECNSMCSCNKTCPNRVLQNGIRVKLEVFKTDNKGWAVRAGEPILRGTFICEYIGEVLDEQE ANDRRDRYGKEGCSYMYKIDAHTNDMSRMVEGQSHYFIDATKYGNVSRFINHSCMPNLANHQVLVNSMDSQRAHIGLYASRDISFGEELTYNYRYELLPG EGYPCHCGASKCRGRLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.007G033000 [exp]	0	1
AT5G40480		EMB3012	embryo defective 3012 (.1)		Potri.001G345100 [exp]	6.92	0.7803
AT2G48060			unknown protein		Potri.014G137200 [exp]	7.93	0.7721
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.010G246000 [exp]	8.12	0.7644
AT5G65560			Pentatricopeptide repeat (PPR)...		Potri.006G124900 [exp]	9.59	0.8008
AT3G11960			Cleavage and polyadenylation s...		Potri.006G197200 [exp]	14.42	0.7767
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Potri.002G221300 [exp]	16.91	0.7628
AT1G77320		MEI1	meiosis defective 1, transcrip...		Potri.005G182500 [exp]	18.33	0.7261
AT3G16610			pentatricopeptide (PPR) repeat...		Potri.003G006800 [exp]	18.97	0.7734
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.005G129800 [exp]	20.04	0.7789
AT2G17580			Polynucleotide adenylyltransfe...		Potri.005G100100 [exp]	20.83	0.7376

Compare expression of checked genes

Potri.007G033000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.