Plant FIBer expression Database

PSBO.2 (Potri.007G033700) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol PSBO.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G50820 537 / 0 OEC33, PSBO2, PSBO-2 OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, photosystem II subunit O-2 (.1)
AT5G66570 534 / 0 MSP-1, PSBO1, OEE33, OEE1, OE33, PSBO-1 OXYGEN EVOLVING ENHANCER PROTEIN 33, 33 KDA OXYGEN EVOLVING POLYPEPTIDE 1, OXYGEN EVOLVING COMPLEX 33 KILODALTON PROTEIN, MANGANESE-STABILIZING PROTEIN 1, PS II oxygen-evolving complex 1 (.1)
AT4G37230 138 / 3e-40 Photosystem II manganese-stabilising protein (PsbO) family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G130400
[exp]
603 / 0 AT3G50820 547 / 0.0 OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, photosystem II subunit O-2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016783
[exp]
545 / 0 AT3G50820 535 / 0.0 OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, photosystem II subunit O-2 (.1)
Lus10022479
[exp]
540 / 0 AT3G50820 530 / 0.0 OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, photosystem II subunit O-2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0193 MBB PF01716 MSP Manganese-stabilising protein / photosystem II polypeptide
Representative CDS sequence
>Potri.007G033700.1 pacid=42765230 polypeptide=Potri.007G033700.1.p locus=Potri.007G033700 ID=Potri.007G033700.1.v4.1 annot-version=v4.1
ATGGCAGCCTCACTGCAAGCAGCAGCTACACTGATGCAACCCACCAAGGTGGGTGTGCCTTCTAGGACCAGCCTTCAACTAAGGTCTTCTCAAAGTGTTT
CCAAGGCTTTTGGCTTGGAACCAGCTAGTGCTAGGATTTCTTGCTCTTTGCAATCTGACCTTAAAGACTTGGCTCAAAAGTGTGTAGATGCTAGTAAGAT
AGCTGGTTTTGCTCTTGCTACTTCAGCTCTTGTTGTCTCGGGAGCAAGTGCTGAAGGAGTTCCGAAGAGGCTGACCTATGAAGAAATCCAGAGCAAGACA
TACATGGAAGTAAAAGGATCTGGAACTGCTAACCAATGCCCAACCATTGACGGAGGACTTGATTCATTTGCCTTCAAGCCCGGCAAATACAATGCTAAGA
AGATCTGCTTAGAGCCAACTTCATTCACAGTCAAGGCTGAAGGTATAAACAAGAATTCCCCACCTGATTTCCAAAAAACTAAGCTTATGACACGTTTAAC
CTACACTCTTGACGAGATTGAGGGACCTTTCGAAGTCTCTTCTGATGGAAACATCAAGTTTGAGGAGAAAGATGGCATTGACTATGCTGCTGTGACTGTT
CAGCTACCTGGTGGTGAGCGTGTGCCTTTCCTTTTCACCATTAAACAGTTGGTTGCATCAGGAAAACCAGACAGCTTCAGTGGAGATTTCCTTGTACCAT
CCTACCGGGGCTCTTCTTTCCTGGACCCAAAGGGAAGAGGTGGTTCAACCGGTTATGACAATGCAGTTGCATTGCCTGCTGGAGGCAGAGGGGATGAGGA
GGAACTAACCAAGGAAAACATCAAGAACACCGCATCATCAACAGGTAAAATCACCCTAAGTGTTACCAAGAGCAAGCCTGAGACCGGAGAGGTCATAGGA
GTGTTTGAGAGTGTCCAGCCATCCGATACTGATTTGGGAGCAAAGACCCCAAAGGATGTCAAGATCCAGGGGATCTGGTATGCTCAGCTTGATCAATAG
AA sequence
>Potri.007G033700.1 pacid=42765230 polypeptide=Potri.007G033700.1.p locus=Potri.007G033700 ID=Potri.007G033700.1.v4.1 annot-version=v4.1
MAASLQAAATLMQPTKVGVPSRTSLQLRSSQSVSKAFGLEPASARISCSLQSDLKDLAQKCVDASKIAGFALATSALVVSGASAEGVPKRLTYEEIQSKT
YMEVKGSGTANQCPTIDGGLDSFAFKPGKYNAKKICLEPTSFTVKAEGINKNSPPDFQKTKLMTRLTYTLDEIEGPFEVSSDGNIKFEEKDGIDYAAVTV
QLPGGERVPFLFTIKQLVASGKPDSFSGDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELTKENIKNTASSTGKITLSVTKSKPETGEVIG
VFESVQPSDTDLGAKTPKDVKIQGIWYAQLDQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G50820 OEC33, PSBO2, P... OXYGEN EVOLVING COMPLEX SUBUNI... Potri.007G033700
[exp]
0 1 PSBO.2
AT4G35250 NAD(P)-binding Rossmann-fold s... Potri.004G183100
[exp]
1.00 0.9896
AT5G64040 PSAN, PSI-N photosystem I reaction center ... Potri.007G105900
[exp]
2.44 0.9854
AT4G02530 chloroplast thylakoid lumen pr... Potri.018G129600
[exp]
2.44 0.9836
AT1G08380 PSAO photosystem I subunit O (.1) Potri.004G199400
[exp]
4.89 0.9809
AT4G25080 CHLM magnesium-protoporphyrin IX me... Potri.012G106600
[exp]
4.89 0.9772
AT1G52230 PSAH2, PSAH-2, ... PHOTOSYSTEM I SUBUNIT H-2, pho... Potri.003G052500
[exp]
5.29 0.9787 Pt-PSAH.1
AT2G30570 PSBW photosystem II reaction center... Potri.005G218800
[exp]
7.41 0.9802
Potri.018G012050
[exp]
7.74 0.9734
AT3G56650 Mog1/PsbP/DUF1795-like photosy... Potri.006G034300
[exp]
8.12 0.9699
AT4G04640 ATPC1 ATPase, F1 complex, gamma subu... Potri.011G003800
[exp]
8.12 0.9787

Potri.007G033700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.