Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50830 282 / 1e-97 ATCOR413-PM2, COR413-PM2 cold-regulated 413-plasma membrane 2 (.1) AT4G37220 250 / 4e-85 Cold acclimation protein WCOR413 family (.1) AT2G15970 220 / 2e-73 ATCYP19, FL3-5A3, ATCOR413-PM1, WCOR413-LIKE, COR413-PM1 CYCLOPHILLIN 19, ARABIDOPSIS THALIANA COLD-REGULATED413 PLASMA MEMBRANE 1, cold regulated 413 plasma membrane 1 (.1.2) AT2G23680 140 / 5e-42 Cold acclimation protein WCOR413 family (.1.2) AT1G29390 67 / 6e-14 COR413IM2, COR314-TM2 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) AT1G29395 63 / 5e-12 COR413IM1, COR413-TM1, COR414-TM1 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G149100 [exp] 271 / 2e-93 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Potri.009G109800 [exp] 271 / 3e-93 AT3G50830 238 / 4e-80 cold-regulated 413-plasma membrane 2 (.1) Potri.007G032000 [exp] 81 / 3e-19 AT4G37220 72 / 7e-16 Cold acclimation protein WCOR413 family (.1) Potri.001G353500 [exp] 51 / 8e-08 AT1G29395 185 / 1e-58 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016782 [exp] 281 / 1e-97 AT3G50830 277 / 9e-96 cold-regulated 413-plasma membrane 2 (.1) Lus10021020 [exp] 264 / 2e-90 AT4G37220 258 / 3e-88 Cold acclimation protein WCOR413 family (.1) Lus10012034 [exp] 238 / 3e-80 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Lus10027946 [exp] 233 / 2e-78 AT3G50830 247 / 5e-84 cold-regulated 413-plasma membrane 2 (.1) Lus10027945 [exp] 231 / 2e-77 AT4G37220 245 / 4e-83 Cold acclimation protein WCOR413 family (.1) Lus10012035 [exp] 229 / 5e-77 AT4G37220 242 / 6e-82 Cold acclimation protein WCOR413 family (.1) Lus10023833 [exp] 182 / 1e-58 AT3G50830 175 / 3e-56 cold-regulated 413-plasma membrane 2 (.1) Lus10025378 [exp] 67 / 2e-13 AT1G29390 225 / 2e-74 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10015258 [exp] 66 / 4e-13 AT1G29390 223 / 1e-73 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10004599 [exp] 62 / 1e-11 AT1G29395 201 / 9e-65 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05562 [poplar] [flax] WCOR413 Cold acclimation protein WCOR413
Representative CDS sequence Show only first row Show all	>Potri.007G033801.1 pacid=42766717 polypeptide=Potri.007G033801.1.p locus=Potri.007G033801 ID=Potri.007G033801.1.v4.1 annot-version=v4.1 ATGGGGAGGATGGAGTTTTTGAAGATGAAGACTGATGATGAAGTCAGCGCTAATTTAATTGAGTCCGATGTCAATGAGCTCAAGGTTGCTGCTAAGAAAC TCATCAAGGATGCCGCTAAGCTTGGTGGCTTGGGGTTTGGTACCTCTTTTCTCAAATGGGTTGCCTCCTTTGCTGCTATTTATTTGTTGATATTGGACCG GACAAACTGGAGATCCAACATGCTGACTTCACTTTTAGTCCCTTACATTTTCTTTAGTCTTCCTTCTGTACTATTTAACTTCTTCAGAGGGGAAGTTGGA AGGTGGATTGCTTTTGTTGCAGTGGTTCTCAGGCTCTTCTTCCCACGACATTTTCCAGATTGGCTGGAGATGCCAGGATCAATAATTCTTCTTCTGGTTG TGGCTCCAAATTTCTTTGCACACACCTTGAAGGGGAGCGTGGTTGGTGTCTTCATATGCCTTATCATTGCTTGTTACCTATTGCAAGAGCACATCCGGGC ATCTGGTGGATTCAGAAATTCGTTTACACAGCCCCATGGAATATCAAACACTGTTGGGATTATCCTTCTGATAGTTTATCCTGTGTGGGCACTAGTGCTT CACTTCTTGTAG
AA sequence Show only first row Show all	>Potri.007G033801.1 pacid=42766717 polypeptide=Potri.007G033801.1.p locus=Potri.007G033801 ID=Potri.007G033801.1.v4.1 annot-version=v4.1 MGRMEFLKMKTDDEVSANLIESDVNELKVAAKKLIKDAAKLGGLGFGTSFLKWVASFAAIYLLILDRTNWRSNMLTSLLVPYIFFSLPSVLFNFFRGEVG RWIAFVAVVLRLFFPRHFPDWLEMPGSIILLLVVAPNFFAHTLKGSVVGVFICLIIACYLLQEHIRASGGFRNSFTQPHGISNTVGIILLIVYPVWALVL HFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Potri.007G033801 [exp]	0	1
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Potri.014G143300 [exp]	4.58	0.7671
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Potri.014G128600 [exp]	6.70	0.7437	ATMHX.1
AT3G58750		CSY2	citrate synthase 2 (.1)		Potri.016G089300 [exp]	16.24	0.6846
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.014G060300 [exp]	95.01	0.6892
AT5G40370		GRXC2	glutaredoxin C2, Glutaredoxin ...		Potri.001G347700 [exp]	98.78	0.6907	PtrcGrx_C2
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.018G098200 [exp]	188.81	0.7075
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Potri.001G338400 [exp]	200.44	0.6784	SDH2.1

Compare expression of checked genes

Potri.007G033801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.