Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66560 789 / 0 Phototropic-responsive NPH3 family protein (.1) AT3G50840 625 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G30440 531 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G03250 440 / 3e-147 Phototropic-responsive NPH3 family protein (.1) AT3G44820 418 / 4e-138 Phototropic-responsive NPH3 family protein (.1) AT5G13600 413 / 1e-136 Phototropic-responsive NPH3 family protein (.1) AT5G48800 338 / 1e-107 Phototropic-responsive NPH3 family protein (.1) AT5G67385 335 / 2e-106 Phototropic-responsive NPH3 family protein (.1) AT3G08660 323 / 2e-102 Phototropic-responsive NPH3 family protein (.1) AT1G03010 312 / 2e-97 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G130700 [exp] 1060 / 0 AT5G66560 733 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 527 / 0 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 506 / 1e-172 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 457 / 1e-153 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 455 / 1e-152 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 451 / 5e-151 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 451 / 6e-151 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 450 / 1e-150 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 395 / 5e-129 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037432 [exp] 791 / 0 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 787 / 0 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 526 / 3e-180 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 525 / 1e-179 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 427 / 1e-141 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 424 / 4e-140 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 422 / 2e-139 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 414 / 9e-137 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 414 / 1e-136 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 411 / 2e-135 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.007G033900.1 pacid=42765073 polypeptide=Potri.007G033900.1.p locus=Potri.007G033900 ID=Potri.007G033900.1.v4.1 annot-version=v4.1 ATGGCGGCTGAGAAGCCTAGCTCTAAAGGACAAGCATGGTTTTGCACAACTGGGCTGCCAAGTGACATTGTGATTGAAGTAGGAGATATGACCTTTCACC TCCACAAGTTTCCTCTGATGTCAAAAAGCAGAAAGCTTCATCAACTAATAACAGAGCAAGAAACCCAAAGGAATGACCAACAAGAACCAGAAGAAGAAAG AGATGAAATTGAAGAAATTCTTTGTCAGATTTCTCTCCTTGATTTCCCAGGCGGCTCTGAAACGTTTGAGATGGCTGCCAAGTTTTGCTACGGCGTAAAG GTAGACTTAAACTCATCTATCATCGCTCCTCTTCGCTGTGCTGGAGAGTTTCTTGAAATGACGGAAGAATATTCAGAAGATAATTTAATTTCCAAGACAG AGAGGTTTTTCTCTCATTCTGTACTCAAAAGTCTCAAGGAATCAATTAAGGCCTTAAAATCTTGCGAGCGGGTAATGGCACTGGCGGAAAGTTTAGGCAT CACAGAGAGATGCATTGATTCCATTATTTCCAGAGCATCCTCTGCCGATCCAGCCTTATTTGGCTGGCCGGTTAGCGAAGCAGCAAATGAGAATATCAAA GCCAGTTCCAATCAGGCCCTGTGGAATGGGATTGAATCCGCGGTACGTAGAAAAGGAGGTGGTGCTAGAAGCAATAATGCGGATTCTTGGTTTGAAGATT TGGCACTTTTGAGCATGCCATTGTTTAAGCGATTGATTTTGGCTATGAAAGTGCGAGATCTGAATCCGGAGATTTTAGAGAGTTGTTTAATGTACTATGC CAAGAAGCACATTCCGGGCATATCAAGATTAAGTAGGAAGCCATCTTCTTCATCATCTTCAATTGCTTCAGAGGGTGGGCAAAGGGAAGTGTTGGAGACT ACTGTTTCCAATCTTCCATTGCACAGAAGTTCTAGATCTTCCACAGCTACAAGGTTCTTATTTGGTTTGCTAAGAACTGCTAACATACTAAATGCAGCTG AAGAGTGTCGGTCCACTTTGGAGAAGAAAATCGGGTTGCAACTGGAGCAAGCTACACTAGATGATTTGTTGATTCCTAGCTATTCATATTTGAATGAGAC ATTATATGATGTGGATTGCTTGGAGAGAATTTTAGGCCACTTCTTGGATGGACTTCAAGAAGAGAGAAATGTAGGTGAGATTGAAGCCGGCGAGGATGGT GGAGATAGCAATGTGAGATCACCCACTTTAATGCTTGTTGGTAAACTAATTGATGGCTATCTTGCTGAGATTGCATCAGATGCAAATTTAAAGCCTGATA GATTCCATAATCTTGCAATTTCACTACCGGAGCAAGCTAGACTCTTTGATGATGGCCTTTACCGAGCTGTAGATGTCTATCTCAAGGCCCATCCATGGAT ATCAGAGGCAGAGCGGGAGAAGATATGTGGAGTAATGGATTGTCAAAAGCTCACATTAGAAGCGTGCACTCACGCAGCACAAAATGAGCGGCTGCCATTG CGTGCGGTGGTTCAAGTTTTGTTTTTCGAGCAGTTACAGCTGCGCCACGCAATTGCAGGGACATTGATTGCGGCTGAAGCTGATCCTGCAAGGCCATCCA TGCTAAGACGAAGGGAGGAAGAGGCAGAGGCAGAAGCAGGGGCAGAGGCAGAAGCAGGGGCAATGCAGGAGGGTACCAGTAACACTTGGAGGGCAGCAGT GAGGGAAAATCAAGTGCTGAGACTAGACATGGACAGCATGAGGACTAGGGTGCATCAGCTTGAACGAGAATGTTCAACTATGAAAAAGGTGATTGATAAG ATTGATAAGGAGGGTCCGCGTGGTAACAATGGAGGGTGGAGAGAGTCCCTGACAAGGAGGTTTGGGTGCAAGTTCAAGACCCAAGTTTGTGATTCTCATG AACAAACGGTTGTAAATGCTAGGAAGGGAAGGCAGCAGCAGCAGCATCAACATCAACAATAG
AA sequence Show only first row Show all	>Potri.007G033900.1 pacid=42765073 polypeptide=Potri.007G033900.1.p locus=Potri.007G033900 ID=Potri.007G033900.1.v4.1 annot-version=v4.1 MAAEKPSSKGQAWFCTTGLPSDIVIEVGDMTFHLHKFPLMSKSRKLHQLITEQETQRNDQQEPEEERDEIEEILCQISLLDFPGGSETFEMAAKFCYGVK VDLNSSIIAPLRCAGEFLEMTEEYSEDNLISKTERFFSHSVLKSLKESIKALKSCERVMALAESLGITERCIDSIISRASSADPALFGWPVSEAANENIK ASSNQALWNGIESAVRRKGGGARSNNADSWFEDLALLSMPLFKRLILAMKVRDLNPEILESCLMYYAKKHIPGISRLSRKPSSSSSSIASEGGQREVLET TVSNLPLHRSSRSSTATRFLFGLLRTANILNAAEECRSTLEKKIGLQLEQATLDDLLIPSYSYLNETLYDVDCLERILGHFLDGLQEERNVGEIEAGEDG GDSNVRSPTLMLVGKLIDGYLAEIASDANLKPDRFHNLAISLPEQARLFDDGLYRAVDVYLKAHPWISEAEREKICGVMDCQKLTLEACTHAAQNERLPL RAVVQVLFFEQLQLRHAIAGTLIAAEADPARPSMLRRREEEAEAEAGAEAEAGAMQEGTSNTWRAAVRENQVLRLDMDSMRTRVHQLERECSTMKKVIDK IDKEGPRGNNGGWRESLTRRFGCKFKTQVCDSHEQTVVNARKGRQQQQHQHQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66560			Phototropic-responsive NPH3 fa...		Potri.007G033900 [exp]	0	1
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Potri.008G118300 [exp]	1.73	0.8252	PAN.2
AT1G27150			Tetratricopeptide repeat (TPR)...		Potri.010G035400 [exp]	2.44	0.7928
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G136501 [exp]	3.16	0.8390
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Potri.019G061700 [exp]	4.47	0.8056
AT1G13970			Protein of unknown function (D...		Potri.010G163100 [exp]	6.92	0.8131
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G137000 [exp]	7.34	0.7873
AT4G35240			Protein of unknown function (D...		Potri.004G182900 [exp]	9.38	0.7436
AT1G16220			Protein phosphatase 2C family ...		Potri.004G066200 [exp]	9.48	0.7865
AT2G37050			Leucine-rich repeat protein ki...		Potri.006G132100 [exp]	12.44	0.7527
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.011G144500 [exp]	14.42	0.7606

Compare expression of checked genes

Potri.007G033900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.