Plant FIBer expression Database

Potri.007G034200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37210 365 / 4e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G130800
[exp]
586 / 0 AT4G37210 343 / 3e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Potri.002G130800
[exp]
73 / 5e-14 AT4G37210 62 / 1e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Potri.001G030401
[exp]
54 / 1e-07 AT4G37210 64 / 4e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000740
[exp]
415 / 1e-141 AT4G37210 418 / 3e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Lus10019658
[exp]
352 / 1e-118 AT4G37210 328 / 2e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF13414 TPR_11 TPR repeat
Representative CDS sequence
>Potri.007G034200.1 pacid=42765142 polypeptide=Potri.007G034200.1.p locus=Potri.007G034200 ID=Potri.007G034200.1.v4.1 annot-version=v4.1
ATGGCTTCGGAACCCTCAATAACCGCCGCCTCAGAAACCCAAGCCTCAGTCGAAGTCACCACTACCTCTCATGACGTAACCGCCGACTCCACCTGCAATG
ACAACAATGGAGAAACTTCAGACCCAGAGAAGTCTCTGGATTTCGCTGTTGAGTTATTAGAGAAAGGATCTACGGCGCTTAAAGAAAATGACTTCAGTGA
AGCCGTAGAATGCTTTAGCCGTGCCCTTGAAATCAGGGTTTTGCATCATGGTGAGCTTGCACTTGAATGTGTGAATGCATACTATCATTATGGACGTGCA
CTGTTGTATAAAGCGCAAGAGGAGGCTGATCCGTTGGGTATGGTGCCTAAGAAGGATAGTGAATCTAAACAAAATGATGATAAAGATGCAGCTTGTAAGA
ATGTTTTAAATGGAGAATCTTCGACTACTTCTGCTTCTAGTAATGTTGGAGAAGATGGGGGTTTTAATCATCCAGAAGCTTCTGATGGGAAAGATGAAGA
AGAAGATGATGAGGGAAGTGATGATGATGACGACCTTGCTGATGCAGATGAAGAGGAATCTGACCTTGATTTGGCATGGAAAATGCTAGATGTTGCAAGG
GCAATTGCAGAAAAACACCCTGGTGACACAATGGATAAAGTTGACATACTATCAGCACTGGCAGAAGTTGCGTTGGAAAGAGAGGATATTGAAACATCTC
TCAGTGACTACCAGAAGTCACTATCCATTTTAGAAAGGCTTGTTGAACCAGACAGTAGACATTTAGCTGAACTAAATTTTCGGATATGTTTGTGTCTGGA
GATTGGCTCTAAGTCCCAGGAAGCAATCCCATATTGCCAGAAGGCTATATCAGTTTGCAAGGCACGGTTGCAGCGACTCATCAATGAACTAAAGAGTTCT
GGAGAATCAGCCACAACACCAGCTATTTCTGAATTAGACGAGGGTGTCCAGCAGTTGTCTAACATGCAGGCTGATAAATCTGTGACTGATAAAGAAGCAG
AGATTGAAACGCTTACTGGCCTGTCTGGGGAGCTGGAAAAGAAGCTTGAAGATCTACAACAGCTGGTCCTGAACCCAAAGTCCATTCTCTCAGAAATCCT
GGGAATGGTAGCTGCTAAGGGAAAGGGAGGCGAGAAGAGTGTTTTTCCAACTGCCATGAACTCTTCTCAGATGGGTACTGCTACTAGCAGTGGAGGTTTT
GACTCGCCAACCATTTCCACTGCTCACACAAATGGGGCTTCTGGAGTCACAGATCTTGGTGTCGTCGGAAGAGGAGTTAAGCGAGTTTTGACCAGTACAG
GTTCGACTGGATCAAGCCCAGTGAAGAAACCTACTCCTGATCCCTCGTCAGACAAAGGGGATGGAAAAACCTTTTAG
AA sequence
>Potri.007G034200.1 pacid=42765142 polypeptide=Potri.007G034200.1.p locus=Potri.007G034200 ID=Potri.007G034200.1.v4.1 annot-version=v4.1
MASEPSITAASETQASVEVTTTSHDVTADSTCNDNNGETSDPEKSLDFAVELLEKGSTALKENDFSEAVECFSRALEIRVLHHGELALECVNAYYHYGRA
LLYKAQEEADPLGMVPKKDSESKQNDDKDAACKNVLNGESSTTSASSNVGEDGGFNHPEASDGKDEEEDDEGSDDDDDLADADEEESDLDLAWKMLDVAR
AIAEKHPGDTMDKVDILSALAEVALEREDIETSLSDYQKSLSILERLVEPDSRHLAELNFRICLCLEIGSKSQEAIPYCQKAISVCKARLQRLINELKSS
GESATTPAISELDEGVQQLSNMQADKSVTDKEAEIETLTGLSGELEKKLEDLQQLVLNPKSILSEILGMVAAKGKGGEKSVFPTAMNSSQMGTATSSGGF
DSPTISTAHTNGASGVTDLGVVGRGVKRVLTSTGSTGSSPVKKPTPDPSSDKGDGKTF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G37210 Tetratricopeptide repeat (TPR)... Potri.007G034200
[exp]
0 1
AT1G09290 unknown protein Potri.010G099500
[exp]
2.82 0.7472
AT5G11860 SSP5 SCP1-like small phosphatase 5 ... Potri.003G173700
[exp]
3.46 0.7479
AT4G33060 Cyclophilin-like peptidyl-prol... Potri.018G061700
[exp]
5.47 0.7445
AT5G04320 Shugoshin C terminus (.1.2) Potri.010G229100
[exp]
7.74 0.6597
AT1G21690 RFC4, EMB1968 replication factor C 4, embryo... Potri.005G181300
[exp]
8.77 0.7235
AT5G37630 EMB2656 EMBRYO DEFECTIVE 2656, ARM rep... Potri.004G085500
[exp]
8.94 0.7195
AT1G19980 cytomatrix protein-related (.1... Potri.002G022200
[exp]
11.22 0.7294
AT5G04130 GYRB2 DNA GYRASE B2 (.1.2) Potri.006G039400
[exp]
17.17 0.7305
AT5G59970 Histone superfamily protein (.... Potri.007G013300
[exp]
17.29 0.6414
AT1G04870 PRMT10, ATPRMT1... protein arginine methyltransfe... Potri.018G071200
[exp]
18.97 0.6801

Potri.007G034200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.