Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37200 305 / 5e-105 HCF164 HIGH CHLOROPHYLL FLUORESCENCE 164, Thioredoxin superfamily protein (.1) AT1G43560 56 / 2e-09 ATY2 thioredoxin Y2 (.1) AT1G50320 55 / 5e-09 ATHX, ATX thioredoxin X (.1) AT1G76760 54 / 5e-09 ATY1, TRX-Y1 thioredoxin Y1 (.1) AT5G06430 52 / 5e-08 Thioredoxin superfamily protein (.1) AT3G15360 52 / 7e-08 ATHM4, ATM4, TRX-M4 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) AT2G15570 51 / 1e-07 TRX-M3, GAT1, ATHM3, ATM3 THIOREDOXIN-M3, GFP ARRESTED TRAFFICKING 1, Arabidopsis thioredoxin M-type 3, Thioredoxin superfamily protein (.1.2) AT1G21750 51 / 3e-07 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT2G47470 50 / 5e-07 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G19730 47 / 1e-06 ATTRX4, ATH4 thioredoxin H-type 4, Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G132200 [exp] 58 / 5e-10 AT4G03520 173 / 4e-55 Thioredoxin superfamily protein (.1.2) Potri.002G073000 [exp] 57 / 1e-09 AT4G03520 152 / 6e-47 Thioredoxin superfamily protein (.1.2) Potri.014G035300 [exp] 56 / 4e-09 AT5G06430 251 / 1e-85 Thioredoxin superfamily protein (.1) Potri.005G186800 [exp] 55 / 5e-09 AT4G03520 152 / 3e-47 Thioredoxin superfamily protein (.1.2) Potri.011G120700 [exp] 54 / 1e-08 AT3G15360 190 / 1e-61 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Potri.009G100700 [exp] 53 / 2e-08 AT2G15570 193 / 2e-63 THIOREDOXIN-M3, GFP ARRESTED TRAFFICKING 1, Arabidopsis thioredoxin M-type 3, Thioredoxin superfamily protein (.1.2) Potri.005G193400 [exp] 52 / 3e-08 AT1G76760 198 / 2e-65 thioredoxin Y1 (.1) Potri.007G074000 [exp] 52 / 3e-08 AT1G50320 201 / 3e-66 thioredoxin X (.1) Potri.014G122800 [exp] 54 / 4e-08 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016780 [exp] 305 / 7e-105 AT4G37200 300 / 4e-103 HIGH CHLOROPHYLL FLUORESCENCE 164, Thioredoxin superfamily protein (.1) Lus10022477 [exp] 303 / 3e-104 AT4G37200 298 / 2e-102 HIGH CHLOROPHYLL FLUORESCENCE 164, Thioredoxin superfamily protein (.1) Lus10036337 [exp] 58 / 1e-09 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10010274 [exp] 58 / 2e-09 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10014798 [exp] 56 / 2e-09 AT3G15360 181 / 2e-58 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10040887 [exp] 56 / 2e-09 AT3G15360 182 / 4e-59 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10018875 [exp] 56 / 3e-09 AT1G76760 176 / 6e-57 thioredoxin Y1 (.1) Lus10028569 [exp] 56 / 3e-09 AT1G76760 174 / 3e-56 thioredoxin Y1 (.1) Lus10029755 [exp] 52 / 3e-08 AT3G15360 162 / 3e-51 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1) Lus10042784 [exp] 52 / 6e-08 AT3G15360 165 / 4e-52 ARABIDOPSIS THIOREDOXIN M-TYPE 4, thioredoxin M-type 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Potri.007G034400.4 pacid=42766315 polypeptide=Potri.007G034400.4.p locus=Potri.007G034400 ID=Potri.007G034400.4.v4.1 annot-version=v4.1 ATGGCTCGCGTGGCTTCAAACCCTCTCTGTATCCATAGATTCCGGCCATATCTTCAAGCCTCTCATTCATCACCATCACTCCTCAAATCCACTGTCCACT ATCAAACCAAACCTCGCAAATTCCCTGCTGTTTCTTGCCAAACAAACCCCGACTCATCTGAAACCTCCACACCAACGGAAAAAGAGGTCCTTGAACCTGG TCCAGTTAGTGATGATACCAAAAGAGAGGATACAGGTGCGTCCCAAGATTCTGGGTTACCTGAATTTCCAAATAAAGATGTTAATAAACGAATAGCAGTG GTTTCTCTTCTTGCTGCTGCCGGACTTTTCTTGTCTTCAAGGTTGGATTTTGGTGTTTCTTTGAAGGACTTATCTGTTGCTGCTTTGCCTTATGAAGAGG CCCTCTCAAATGGGAAGCCAACTGTTGTGGAGTTCTATGCAGATTGGTGTGAAGTATGTAGAGAGTTAGCTCCAGATGTCTACAAAGTAGAGCAGCAGTA CAAGGACCGTGTGAATTTTGTTATGCTGAACGTTGATAATACCAAGTGGGAACAAGAACTTGATGAGTTTGGTGTTGAGGGTATTCCGCACTTTGCATTC CTGGATAGAGAGGGGAATGAAGAGGGTAATGTAGTTGGCAGGCTTCCAAGGAAGTACCTACTTGAGAATGTTGAAGCTCTTGCACGTGGGGAAGGATCCA TACCTCATGCCCGAGTTGTTGGACAATATTCAAATGCAGAAAACAGGAAGGTGCGCTCTGTTGATCCTAGAAGCCATGGGTAG
AA sequence Show only first row Show all	>Potri.007G034400.4 pacid=42766315 polypeptide=Potri.007G034400.4.p locus=Potri.007G034400 ID=Potri.007G034400.4.v4.1 annot-version=v4.1 MARVASNPLCIHRFRPYLQASHSSPSLLKSTVHYQTKPRKFPAVSCQTNPDSSETSTPTEKEVLEPGPVSDDTKREDTGASQDSGLPEFPNKDVNKRIAV VSLLAAAGLFLSSRLDFGVSLKDLSVAALPYEEALSNGKPTVVEFYADWCEVCRELAPDVYKVEQQYKDRVNFVMLNVDNTKWEQELDEFGVEGIPHFAF LDREGNEEGNVVGRLPRKYLLENVEALARGEGSIPHARVVGQYSNAENRKVRSVDPRSHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.007G034400 [exp]	0	1
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.009G099032 [exp]	2.64	0.9618
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Potri.005G012900 [exp]	2.82	0.9472
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Potri.008G136800 [exp]	3.31	0.9293	Pt-HSF5.2
AT2G16980			Major facilitator superfamily ...		Potri.004G178600 [exp]	7.41	0.9387
AT2G15960			unknown protein		Potri.004G148200 [exp]	12.00	0.9160
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043700 [exp]	13.85	0.9408
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Potri.011G075800 [exp]	15.42	0.9322	AG1.1
AT3G47570			Leucine-rich repeat protein ki...		Potri.004G060100 [exp]	20.49	0.9138
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Potri.010G046400 [exp]	20.71	0.9273
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142301 [exp]	24.00	0.9243

Compare expression of checked genes

Potri.007G034400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.