Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23450 732 / 0 Protein kinase superfamily protein (.1.2) AT5G66790 543 / 0 Protein kinase superfamily protein (.1) AT1G18390 287 / 3e-87 Protein kinase superfamily protein (.1.2) AT1G25390 284 / 2e-86 Protein kinase superfamily protein (.1) AT3G53840 277 / 1e-83 Protein kinase superfamily protein (.1) AT5G38210 276 / 8e-83 Protein kinase family protein (.1) AT5G02070 274 / 3e-82 Protein kinase family protein (.1) AT1G66880 278 / 4e-80 Protein kinase superfamily protein (.1) AT1G69730 264 / 2e-77 Wall-associated kinase family protein (.1) AT1G69910 258 / 2e-76 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G130900 [exp] 1009 / 0 AT2G23450 773 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G130600 [exp] 635 / 0 AT2G23450 605 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G038600 [exp] 635 / 0 AT2G23450 620 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G121100 [exp] 298 / 2e-91 AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1) Potri.015G044750 [exp] 290 / 6e-88 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G118100 [exp] 290 / 8e-88 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.004G096550 [exp] 288 / 2e-87 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.008G059900 [exp] 287 / 2e-87 AT5G02070 628 / 0.0 Protein kinase family protein (.1) Potri.015G045101 [exp] 287 / 3e-87 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000741 [exp] 719 / 0 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10032741 [exp] 579 / 0 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 533 / 0 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10011652 [exp] 342 / 1e-112 AT2G23450 337 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 289 / 1e-87 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016737 [exp] 285 / 4e-86 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014387 [exp] 280 / 1e-84 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10029132 [exp] 275 / 9e-83 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036691 [exp] 258 / 1e-76 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10034085 [exp] 259 / 2e-76 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.007G034500.2 pacid=42764885 polypeptide=Potri.007G034500.2.p locus=Potri.007G034500 ID=Potri.007G034500.2.v4.1 annot-version=v4.1 ATGATTCTTCAACAAGAAAGTTTAGTTCTTTTCATCACCATCATCACAATTTTTATTGCCGCCACAAGTACTCCAACCAGAGCTCAGAAGTCCAACAGCA GCGATTGTGAATCTTCTTGTGGAACTGGGAAATCAGCTAAAGTTGTCCCATACCCTTTTGGTTTCTCAAGAGGATGTCCCATCATTTTACAGTGCAACCA CACAGTCGGTGACGTCAAAATTGGTGAATTTCAAGTCCAGAACATAACCCCAAATGTCATCATGATCAATATTCTAGCAGACTGTAATCGTTCTATTGAA AGAATCAAGCCTCTTTTTGGCAAGAACTTTGGTCCTTCTTCGAATAACAGTTTGTTACTTCAAAACTGTGACAAGCCTTTAAATAGTTGTGTTATTCCAA CAAGTTCATTACGAAGAGACTTGAAGTTAACAAATTGTGATAAAAATGACAACTTGAATTGTTACTCTCAAGTGCCCAGAGATTTTGATACTCTTGGTTA TGATAATATGACTTCAACTAGCTGCAAGTCTGTTTTCTCTTCGCTTTTTCTTGGGTGGGAGGGTTCGGCTGTTTCTTTCCAGTTTGGAAGAGTTGAATTG GAATGGTGGCTTGAAGGTGGTTACAATAATCTCTGCTCAAATAATGCGAATAGTACTAAAGTTAAGCTTTGGAATGGGAGAGTTGGATTCAGGTGTCATT GCGCTGATGGGTTCGCCGGAGATGGGTTTGCAGCCGGGAATGGTTGCCGGAAAGTTTCTAAGTGCAGTGCTTCAAAGTACATGTCTGGCGAATGTGGAGG AACTACTAGAGTAGGTGTTCTTGTTGGAGGGCTTATTGCTGGAGCTTTGTTAATGGCTGGTTTGGCTTTTCTCTGTTACTATGTCCGGCGTAAGTCCACT TCTTTGCGGAATCGGTTAAGTGCAAAGCGCCTTCTATGTGAAGCTGCAGGCAACTCTAGTGTCCCGTTTTTTCAATATAAAGAAATTGAAAAGGCCACTA ATGGCTTCTCTGAGAAACACAGGCTAGGAATTGGAGCCTATGGTACAGTTTATGCTGGAAAACTCAACAGTGATGATTTGGTTGCCATAAAAAAGCTCAG ACATAGAGATACTGACAGCATTGATCAAGTCATGAATGAAATAAAGCTCCTTTCATCAGTGAGCCATCCGAATCTGGTTCGTCTTTTAGGTTGTTGCATA GAGGAGGGCGAACCAATCCTAGTCTATGAATTTATGCCTAATGGAACTTTGTGTCAGCATCTACAACAAGAGAGGGGCACCGGGCTCCCATGGACAGTTA GACTCACCGTTGCTACTGAAACTGCTAAGGCCATTGCCTATCTCCATTCAGCCATGAATCCACCAATTTACCACCGAGACATAAAATCTAGCAACATACT CTTGGATTACAACTATAGATCAAAGGTAGCTGATTTCGGTCTTTCCAGACTCGGCATGGTCGAATCATCTCACATATCAACAGCCCCGCAAGGAACTCCA GGCTATCTTGATCCTCAATACCATCAATATTTCCATCTTTCTGATAAAAGTGATGTCTACAGTTTCGGAGTAGTTCTTGTAGAGATCATAACTGCACTGA AAGCAGTTGATTTTTCTCGCCCCCACAGTGAGGTTAATTTGGCTGCACTTGCCATTGATAGGATTGGAAGAGGTTGCGTGGATGAGATAATAGATCCATA TCTTGACCCAAATAGAGATGCCTGGACCTTAACATCTATTCTTAGCGTGGCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGGGATATGAGGCCTACT ATGTTGGAAGTGGCAGGAGAGCTAGAACAGATCATGCTCAGTGCATGGATTCCAACCATGTACATGGCATCCCCGTCAGCTTCGTCTTGCTCCTCGCAAA ATGGAAGTCAGAAATCACTGAGCGTCTCTATTGGTAGAAAGGCAGGGTTAGCTAGAGGGAAATTACTTCTTCCGCAGAGAACAGATAGCTTGACTTCATT GGAAGAGACGAAGGATAGCTCCCCCGTTTCTGAGCAGGATACTTGGTTGAGTGAACAGAGCTCACCTTCAACAAACAGCTTGTTGGGTAATGTAGTTCGT TGA
AA sequence Show only first row Show all	>Potri.007G034500.2 pacid=42764885 polypeptide=Potri.007G034500.2.p locus=Potri.007G034500 ID=Potri.007G034500.2.v4.1 annot-version=v4.1 MILQQESLVLFITIITIFIAATSTPTRAQKSNSSDCESSCGTGKSAKVVPYPFGFSRGCPIILQCNHTVGDVKIGEFQVQNITPNVIMINILADCNRSIE RIKPLFGKNFGPSSNNSLLLQNCDKPLNSCVIPTSSLRRDLKLTNCDKNDNLNCYSQVPRDFDTLGYDNMTSTSCKSVFSSLFLGWEGSAVSFQFGRVEL EWWLEGGYNNLCSNNANSTKVKLWNGRVGFRCHCADGFAGDGFAAGNGCRKVSKCSASKYMSGECGGTTRVGVLVGGLIAGALLMAGLAFLCYYVRRKST SLRNRLSAKRLLCEAAGNSSVPFFQYKEIEKATNGFSEKHRLGIGAYGTVYAGKLNSDDLVAIKKLRHRDTDSIDQVMNEIKLLSSVSHPNLVRLLGCCI EEGEPILVYEFMPNGTLCQHLQQERGTGLPWTVRLTVATETAKAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMVESSHISTAPQGTP GYLDPQYHQYFHLSDKSDVYSFGVVLVEIITALKAVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLDPNRDAWTLTSILSVAELAFRCLAFHRDMRPT MLEVAGELEQIMLSAWIPTMYMASPSASSCSSQNGSQKSLSVSIGRKAGLARGKLLLPQRTDSLTSLEETKDSSPVSEQDTWLSEQSSPSTNSLLGNVVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	0	1
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Potri.010G184200 [exp]	2.82	0.8697
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Potri.010G249200 [exp]	2.82	0.8456
AT5G57035			U-box domain-containing protei...		Potri.006G147000 [exp]	3.46	0.8238
AT3G25010		AtRLP41	receptor like protein 41 (.1)		Potri.012G026900 [exp]	4.24	0.8295
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G034000 [exp]	4.47	0.8637	ATCNGC19.5
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.010G212700 [exp]	6.92	0.8383
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.003G148200 [exp]	11.00	0.8243
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032700 [exp]	11.53	0.8365
AT5G57580			Calmodulin-binding protein (.1...		Potri.004G035100 [exp]	11.87	0.8509
AT2G45910			U-box domain-containing protei...		Potri.001G239100 [exp]	12.24	0.7871

Compare expression of checked genes

Potri.007G034500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.