Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27530 338 / 2e-119 PGY1 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) AT1G08360 338 / 2e-119 Ribosomal protein L1p/L10e family (.1) AT5G22440 335 / 4e-118 Ribosomal protein L1p/L10e family (.1.2) AT1G06380 45 / 2e-05 Ribosomal protein L1p/L10e family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G035600 [exp] 402 / 6e-145 AT2G27530 339 / 9e-120 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Potri.004G202832 [exp] 399 / 2e-143 AT2G27530 337 / 7e-119 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Potri.004G202766 [exp] 391 / 1e-140 AT1G08360 336 / 1e-118 Ribosomal protein L1p/L10e family (.1) Potri.015G147700 [exp] 52 / 5e-08 AT3G58660 348 / 9e-117 Ribosomal protein L1p/L10e family (.1) Potri.012G145000 [exp] 52 / 1e-07 AT3G58660 352 / 2e-118 Ribosomal protein L1p/L10e family (.1) Potri.014G143000 [exp] 41 / 0.0003 AT2G42710 367 / 4e-125 Ribosomal protein L1p/L10e family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026664 [exp] 343 / 2e-116 AT2G03510 537 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10004648 [exp] 340 / 4e-115 AT2G03510 541 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10020615 [exp] 317 / 1e-109 AT2G27530 313 / 1e-107 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Lus10036911 [exp] 315 / 9e-105 AT2G03530 575 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) Lus10024134 [exp] 48 / 2e-06 AT3G58660 351 / 2e-118 Ribosomal protein L1p/L10e family (.1) Lus10005380 [exp] 48 / 2e-06 AT3G58660 354 / 1e-119 Ribosomal protein L1p/L10e family (.1) Lus10004871 [exp] 0 / 1 AT2G27530 201 / 3e-92 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Lus10037074 [exp] 0 / 1 AT2G03590 575 / 0.0 ureide permease 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00687 [poplar] [flax] Ribosomal_L1 Ribosomal protein L1p/L10e family
Representative CDS sequence Show only first row Show all	>Potri.007G034800.6 pacid=42766820 polypeptide=Potri.007G034800.6.p locus=Potri.007G034800 ID=Potri.007G034800.6.v4.1 annot-version=v4.1 ATGAGTAAGCTTTCAGGGGATACAATTCGTGAAGCGGTTACTACTATCAAAACTGGTGTGAATGAGAAGCCTCGCAAGTTTGTTCAGACCATTGAGCTAC AGATTGGATTGAAAAATTATGACCCCCAGAAGGACAAGAGGTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCCCGTCCCAAAATGAAGGTCTGCATGCT TGGAGATGCACAACATGTGGAGGAGGCAACATCTATAGGCTTGCAATGGATGGACGTTGAAGCATTGAAGAAGCTAAACAAGAATAAGAAATTGGTCAAA AAGCTTTCCAAGCAGTACCATGCCTTTTTGGCATCGGAGTCTGTCATCAAGCAGATTCCTCGTCTTTTAGGCCCTGGTCTCAACAAGGCAGGAAAGTTTC CCACCCTCGTGAATCACCAAGAGTCATTGGAGTCTAAAGTTAATGAGATCAAGGCAACAGTGAAGTTCCAATTGAAGAAAGTCCTTTGCATGGGGGTTGC TGTTGGTAACTGCGACATGGAGGATAAGCAGATTTTCCAGAATGTTCAAATGTCCGTGAACTTCCTTGTTTCTTTGTTGAAGAAAAATTGGCAAAATGTC AAGTCCCTGCACCTAAAGAGTACCATGGGCACACCAGTCCGCCTCTACTAA
AA sequence Show only first row Show all	>Potri.007G034800.6 pacid=42766820 polypeptide=Potri.007G034800.6.p locus=Potri.007G034800 ID=Potri.007G034800.6.v4.1 annot-version=v4.1 MSKLSGDTIREAVTTIKTGVNEKPRKFVQTIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEATSIGLQWMDVEALKKLNKNKKLVK KLSKQYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVNHQESLESKVNEIKATVKFQLKKVLCMGVAVGNCDMEDKQIFQNVQMSVNFLVSLLKKNWQNV KSLHLKSTMGTPVRLY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Potri.007G034800 [exp]	0	1
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Potri.012G114000 [exp]	1.73	0.9618
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Potri.016G124100 [exp]	2.82	0.9553
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.013G013600 [exp]	3.46	0.9610	RPL18.11
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Potri.016G079800 [exp]	4.47	0.9542
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.002G051300 [exp]	4.47	0.9586
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Potri.001G454000 [exp]	4.89	0.9594
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.004G113900 [exp]	5.09	0.9532
AT1G27400			Ribosomal protein L22p/L17e fa...		Potri.012G096600 [exp]	5.29	0.9559	Pt-RPL17.1
AT3G53020		RPL24B, STV1	SHORT VALVE1, Ribosomal protei...		Potri.012G139400 [exp]	6.63	0.9540
AT1G70600			Ribosomal protein L18e/L15 sup...		Potri.016G069000 [exp]	7.34	0.9550

Compare expression of checked genes

Potri.007G034800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.