Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23470 590 / 0 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) AT5G49820 128 / 6e-32 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT2G31190 109 / 9e-26 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT1G13770 106 / 2e-24 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT3G45890 105 / 9e-24 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT5G01510 92 / 2e-19 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229500 [exp] 124 / 3e-30 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.001G193300 [exp] 108 / 5e-25 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.005G224000 [exp] 105 / 2e-24 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.008G095700 [exp] 96 / 7e-21 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.006G099700 [exp] 82 / 3e-16 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016778 [exp] 686 / 0 AT2G23470 570 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10022474 [exp] 683 / 0 AT2G23470 566 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10010692 [exp] 137 / 9e-35 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10038136 [exp] 137 / 1e-34 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10001413 [exp] 115 / 7e-27 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10001047 [exp] 114 / 8e-27 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10036909 [exp] 107 / 1e-24 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10003558 [exp] 105 / 4e-24 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10033888 [exp] 100 / 2e-22 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10037076 [exp] 80 / 1e-15 AT1G13770 583 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [poplar] [flax] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Potri.007G035300.1 pacid=42765087 polypeptide=Potri.007G035300.1.p locus=Potri.007G035300 ID=Potri.007G035300.1.v4.1 annot-version=v4.1 ATGCAATCCACGTTAAACGCAGCCATAAATTATCATCAACTCAACTTTCAATGGAAATCTCAAAAACCCATTTCAAGAAAATTCAAAACCTCTCCAAAAA TCCTACCTTTAACCAATTCCCTGAGAACTTCTATTAATTATGAACCTGAAGAAGGCCTTGACAAGGTTCCGGGTCCATCCGGGTCTGAACCCAATTCAGT GCTGAGGTTGCCGGTTGTCATTAGGCAGTCGGGTCGGGTTTCGAGGTATATATATGAAGGGAATAGCTTGAAGTTAGTCAGTCTTGATGGGGGTGCAGGG TCCTTTTCTTTGGATTTTGAAGATGCGTTTCGTAAATTGGTTCGGGTTTCAGGTTTTGGTATTAAGGATTTTTTTATACCTAAACAAGTACCTGAGAATT ATATGGGTTATGTTAAGTGGAAGTTTTTGCATAGAGTTTTTAGCTCTGCTTTGCAAGTTCTTGCAACTCAGGCAATGTTTCGAGCTATAGGCATTGGGTA TTCTCGTTCACTCCCATCGGCAGCAGCTCTTAACTGGGTGTTGAAGGATGGACTTGGACGGCTAAGTAGATGTATTTACACTGCTAGCTTAGCATCTGCA TTTGATACTAATTTGAAGAGAGTTAGGTTCACGACATCGGTTCTGTTCAGTTTGAGCATTGGAATTGAGCTGCTGACTCCCACATTTCCTCAGTATTTCT TGCTTCTCGCGACTCTAGCCAACATTGCCAAACAAATAAGCCTTGCGTGCTACCTGGCAACTGGTTCTGCTGTTCATAGAAGCTTTGCAATAGCAGATAA TATTGGTGAAGTTTCTGCCAAAGCACAGATACAAACGGTTAGCTTTGATAACCTTGGTCTCATGCTTGCTGCACTTCTGAATATGTTGTTCAAAAACAAC CAAAGATTGCTTGCAGGTTTACCTTTCTTTGTTTACCCCATTTTCTCAGCTATTGACCTTTTTGGAATATATCAAGGACTCCAGCATGTCCATCTACAAA CATTAACTAAGGATAGGCTTGAAATCATTCTAAATTCATGGATTGATTTCGGGCATGTTCCTTCACCTGCAGAAGTGAGTAAAGAGGAAGGAATTGATTT TCTATGGACCAAAAACAAAGAATTGTGGCCCATTAGAATAAGGTGCTTAAATACCAACAGTGAGATACCAAAGTTGTCAATGATGGCAATGCAGTCTTTA ACTAGCGAGGATTATTATTTTGTATGCATGGAGAGCTCTTGCAGAGAATGGACAAGAATTAAGCCACGAGGTATCCTACTTTGCCTACGGGAGGGTTCTG GTACTGCAGATGTTATTATGGGTTTGTTGCAGGCATGCTACATTCGGAAGGCCCTGCTTTTCAGCAGCATGTGGGAGACGGCTGTGGAGGATAAAGATGT CTCGGACTTGGTTTTCAAGGAGTGGTTTAAATTGATCGATGATAGCAAGCAATCTGCAAAAAGGGATTTGTCCACTTTGAATGATCAAATGGGATCTCTG GGTTGGGCTCTAAAACACATATTACTCAGCACAGAAGAGCAGGCTAGATACAGTTTTGTAGATGATTGA
AA sequence Show only first row Show all	>Potri.007G035300.1 pacid=42765087 polypeptide=Potri.007G035300.1.p locus=Potri.007G035300 ID=Potri.007G035300.1.v4.1 annot-version=v4.1 MQSTLNAAINYHQLNFQWKSQKPISRKFKTSPKILPLTNSLRTSINYEPEEGLDKVPGPSGSEPNSVLRLPVVIRQSGRVSRYIYEGNSLKLVSLDGGAG SFSLDFEDAFRKLVRVSGFGIKDFFIPKQVPENYMGYVKWKFLHRVFSSALQVLATQAMFRAIGIGYSRSLPSAAALNWVLKDGLGRLSRCIYTASLASA FDTNLKRVRFTTSVLFSLSIGIELLTPTFPQYFLLLATLANIAKQISLACYLATGSAVHRSFAIADNIGEVSAKAQIQTVSFDNLGLMLAALLNMLFKNN QRLLAGLPFFVYPIFSAIDLFGIYQGLQHVHLQTLTKDRLEIILNSWIDFGHVPSPAEVSKEEGIDFLWTKNKELWPIRIRCLNTNSEIPKLSMMAMQSL TSEDYYFVCMESSCREWTRIKPRGILLCLREGSGTADVIMGLLQACYIRKALLFSSMWETAVEDKDVSDLVFKEWFKLIDDSKQSAKRDLSTLNDQMGSL GWALKHILLSTEEQARYSFVDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Potri.007G035300 [exp]	0	1
AT1G30960			GTP-binding family protein (.1...		Potri.001G160800 [exp]	4.24	0.7810	Pt-ERG.1
AT4G21660			proline-rich spliceosome-assoc...		Potri.011G047600 [exp]	4.89	0.7468
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Potri.001G253200 [exp]	6.48	0.7665
AT3G13226			regulatory protein RecX family...		Potri.001G467400 [exp]	7.41	0.7601
AT4G23540			ARM repeat superfamily protein...		Potri.006G050000 [exp]	11.48	0.7680
AT5G51130			S-adenosyl-L-methionine-depend...		Potri.018G084700 [exp]	12.32	0.6994
AT3G12670		EMB2742	embryo defective 2742, CTP syn...		Potri.010G176500 [exp]	15.16	0.7302
AT5G07900			Mitochondrial transcription te...		Potri.001G034600 [exp]	15.49	0.7650
AT3G53940			Mitochondrial substrate carrie...		Potri.016G103300 [exp]	17.00	0.7214
AT5G66180			S-adenosyl-L-methionine-depend...		Potri.007G056800 [exp]	17.54	0.7437

Compare expression of checked genes

Potri.007G035300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.