Plant FIBer expression Database

Potri.007G035400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12680 411 / 7e-138 unknown protein
AT5G40640 393 / 1e-130 unknown protein
AT3G27390 381 / 7e-126 unknown protein
AT4G37030 376 / 4e-124 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G338900
[exp]
387 / 3e-128 AT5G40640 718 / 0.0 unknown protein
Potri.007G042400
[exp]
379 / 2e-125 AT4G37030 707 / 0.0 unknown protein
Potri.014G170800
[exp]
367 / 1e-120 AT4G12680 685 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016056
[exp]
402 / 3e-134 AT4G12680 749 / 0.0 unknown protein
Lus10022317
[exp]
391 / 5e-130 AT3G27390 722 / 0.0 unknown protein
Lus10025177
[exp]
387 / 4e-128 AT4G12680 738 / 0.0 unknown protein
Lus10032110
[exp]
372 / 2e-122 AT3G27390 728 / 0.0 unknown protein
Lus10011021
[exp]
369 / 4e-121 AT4G37030 698 / 0.0 unknown protein
Lus10001003
[exp]
367 / 1e-120 AT4G37030 707 / 0.0 unknown protein
Lus10014575
[exp]
368 / 1e-119 AT5G40640 714 / 0.0 unknown protein
Lus10014881
[exp]
208 / 6e-62 AT3G27390 380 / 3e-128 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G035400.1 pacid=42766022 polypeptide=Potri.007G035400.1.p locus=Potri.007G035400 ID=Potri.007G035400.1.v4.1 annot-version=v4.1
ATGAATGTTCCTAAAGGATTCCTGAACTATCTTTTATACTCTATCATCTTCTTTCCAATTTTTTTGTTTCTATTTTTTCTTGGATGCATCAAAGGTGCTA
TTTTCAGTCCCTTTGTTTTTCTGGTAATTGCATTTGGTGATACTGGTATAGTCATTGGTTTATGGCCCCTTCACCTTATATGGAGCATGTACTGCATAAT
AAAATCAAAGAGGTTTGGCCCATATATGAAATGCCTATTGATTTTACTAGTTCCACTACCAGTAGCTTTGTGGACTGTTGTTGGAGTTGTTGGGAGTGCG
ATTATGGGTGCTATGTATGGTTTCATTTGGCCTGTCATGGAGACATTTCGGGCTATCAGCAAGGAAGGTTCAATTTGTATGAAGTTGATTAGATGCTTTA
CTGATGGCACTTGGTCCTGTGTTCGGGGAGCATGCACAGTTGTCCGTGATTTTGTTGACTTTTCCTTCCACTCGTACTTCTCTGTTATGGATGAGCTGCT
GGCGTCGAAGGGGGAGGAGCCTATTGAACTCAAGGTTGCTCAGATACCTGGATGCATACTGGCAGCAATTCTAGGAATTGTGGTTGATGTTCATGTCATC
ACCATGATAGTTCTGTTAAAAGCACCTTTAATGCTGTTGAAAGGTTGGCACCGGCTAATACAAGATCTTATAGGAAGGGAAGGCCCATTTTTGGAGACTG
TATGTGTTCCCTTTGCCTCACTTTGGATTCTGTTATGGCCTATTATGGTTCTGCTGGCGATTGCAGCAGGCATAATATCAAGTCTTGGTTTTGGCTGTTT
TGCTGCAGTTGTTGCATATCAGGAGAATTCTACTAAGAGAGGGTTGCTTTATGTTATTGCCTCTGCCTCTATATTTGATGAGTACACCAATGATTTACTT
TACTTGCAAGAAGGCTCCTGCTTCCCCAGGCCCAGATATCGAAAAGGGGCTACTTCCAGTTCTTCACTGCTTCCTGTGAAGGGACTGCATGAACGGTTTG
AAGCTGCTTATGTTGGTGAACAATTAGTAACGACTACTACAGATAAAGCCACCTCACTGAAGGCCGCAATGATATGGGATAGTTTCTTCAAAACATTTGA
AGATATAGGGAAAGAGCTTCTCAGAATGGGAGCCATTGGAATGCCAGATCTTGATGCCTGGGCAGACTCAAAATCAAAGATCATCGACAATGGAATTCCT
GCATATGCATTTCTTGAATGCTTCCTCCGCTCTTTCAAGCATGGCTCCTATGGTTTAATCCTGCGTGACAAAGTTGAGATAACAAGATTGAATAGACCAG
AAGGACGAATTTTTGATTGGCTCTATGAGCCAATGTGCATCATGAAGGAGCAAATCAGCAGTCTAAAATTAGATGAATCTGAGGAGCTGTACTTTTACAA
ACACTGCCTGTATGGTGGCGATGAAAATAGAATAAAAACTTGGCTGAATGGTGGCACTCCCCCATCTGACGAGATCAAAAGAGCTCAGTTGGAGGGTATT
AGTAGAAGATTGCAAGGTTTCTGTTTGACGCTGTCAAGGCTGCCAACATCAAGGCGTCGCTTCTGTGAAGTTGTGAAGGCTATTGAGCAGGAAGCAAAGA
ACTCTAGCATCCTAGCGGGCGGAGATGACTTGGAGGCAGCTAGATAG
AA sequence
>Potri.007G035400.1 pacid=42766022 polypeptide=Potri.007G035400.1.p locus=Potri.007G035400 ID=Potri.007G035400.1.v4.1 annot-version=v4.1
MNVPKGFLNYLLYSIIFFPIFLFLFFLGCIKGAIFSPFVFLVIAFGDTGIVIGLWPLHLIWSMYCIIKSKRFGPYMKCLLILLVPLPVALWTVVGVVGSA
IMGAMYGFIWPVMETFRAISKEGSICMKLIRCFTDGTWSCVRGACTVVRDFVDFSFHSYFSVMDELLASKGEEPIELKVAQIPGCILAAILGIVVDVHVI
TMIVLLKAPLMLLKGWHRLIQDLIGREGPFLETVCVPFASLWILLWPIMVLLAIAAGIISSLGFGCFAAVVAYQENSTKRGLLYVIASASIFDEYTNDLL
YLQEGSCFPRPRYRKGATSSSSLLPVKGLHERFEAAYVGEQLVTTTTDKATSLKAAMIWDSFFKTFEDIGKELLRMGAIGMPDLDAWADSKSKIIDNGIP
AYAFLECFLRSFKHGSYGLILRDKVEITRLNRPEGRIFDWLYEPMCIMKEQISSLKLDESEELYFYKHCLYGGDENRIKTWLNGGTPPSDEIKRAQLEGI
SRRLQGFCLTLSRLPTSRRRFCEVVKAIEQEAKNSSILAGGDDLEAAR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G12680 unknown protein Potri.007G035400
[exp]
0 1
AT4G33360 FLDH farnesol dehydrogenase, NAD(P)... Potri.002G127400
[exp]
1.73 0.8147
AT1G60680 AGD2 NAD(P)-linked oxidoreductase s... Potri.005G052400
[exp]
5.29 0.8134
AT1G68300 Adenine nucleotide alpha hydro... Potri.010G123400
[exp]
11.48 0.8019
Potri.001G107400
[exp]
14.83 0.7786
AT3G14690 CYP72A15 "cytochrome P450, family 72, s... Potri.011G101500
[exp]
18.54 0.7982
AT3G14690 CYP72A15 "cytochrome P450, family 72, s... Potri.011G099800
[exp]
24.26 0.7663
AT1G01360 PYL9, RCAR1 PYRABACTIN RESISTANCE 1-LIKE 9... Potri.002G169400
[exp]
25.09 0.7960
AT2G46410 MYB CPC CAPRICE, Homeodomain-like supe... Potri.007G122800
[exp]
25.45 0.7937
AT3G14690 CYP72A15 "cytochrome P450, family 72, s... Potri.011G099400
[exp]
27.22 0.7927
AT4G15093 catalytic LigB subunit of arom... Potri.018G136800
[exp]
27.49 0.7779

Potri.007G035400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.