Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66960 1087 / 0 Prolyl oligopeptidase family protein (.1) AT1G69020 471 / 2e-155 Prolyl oligopeptidase family protein (.1) AT1G50380 239 / 3e-68 Prolyl oligopeptidase family protein (.1) AT1G76140 103 / 1e-22 Prolyl oligopeptidase family protein (.1.2) AT1G20380 103 / 2e-22 Prolyl oligopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137801 [exp] 536 / 9e-180 AT1G69020 889 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G001300 [exp] 268 / 2e-78 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.002G013900 [exp] 102 / 3e-22 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G014000 [exp] 102 / 5e-22 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247400 [exp] 100 / 2e-21 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247300 [exp] 100 / 3e-21 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G128700 [exp] 45 / 0.0002 AT5G36210 1049 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017568 [exp] 1122 / 0 AT5G66960 1124 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10004631 [exp] 503 / 1e-167 AT1G69020 830 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026683 [exp] 483 / 2e-160 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10015387 [exp] 252 / 3e-72 AT1G50380 1096 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032378 [exp] 246 / 7e-70 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1) Lus10032920 [exp] 243 / 1e-69 AT1G50380 1018 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026659 [exp] 134 / 2e-36 AT1G69020 156 / 4e-45 Prolyl oligopeptidase family protein (.1) Lus10034556 [exp] 102 / 4e-22 AT1G76140 1056 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10034558 [exp] 100 / 8e-22 AT1G76140 565 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10021235 [exp] 100 / 3e-21 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00326 [poplar] [flax] Peptidase_S9 Prolyl oligopeptidase family CL0186 [poplar] [flax] Beta_propeller PF02897 [poplar] [flax] Peptidase_S9_N Prolyl oligopeptidase, N-terminal beta-propeller domain
Representative CDS sequence Show only first row Show all	>Potri.007G035900.1 pacid=42764891 polypeptide=Potri.007G035900.1.p locus=Potri.007G035900 ID=Potri.007G035900.1.v4.1 annot-version=v4.1 ATGCGTCACCTCTTAACCACGACTTTCCACCGCCACAACCACCGTCTGCCCACCATTCTTCACCACCTACTCATCCGCCACTATAGACCACCCAAACCAC CAGCCCCACCAGCCCCTCCAAAACATCCAAAACCACCGCAAAAACCTCAATCTTTCACATTCCATGATGCTACCTGGGAAGACCCATATAGCTGGATGTC GCACTTAAATGACAAAGTAGCTATGAGACACATGGATATTTACATGGAACAAGAAGAGAAGTACACAGAAGCTGTCATGTCTGATACCGAGAAACTTCAA AGTAAACTCCAGTCTGAAATGGCTTCAAGACTGCATTTTGACCTCTCTACCTCTCCCATTCGCTGGGGTCCATGGTTGTATTATAAAAGAGTTGAAGCGG GAAAGCAGTATCCTGTGCTTTGTAGGAGATTGGCAAGCTTAAATGAACAATTCATTTCGAATAAAGATCCTTCGGGCGGGTTTGATTTTGTTTCTGGGAG AAAAATTGAGCAGAAGATGGTTGATTACAATCTAGAAGCTGAGAGATTTGGAGGTTATGCTTATGAAGAATTATCAGAAGTGTCACCTGATCATAAGTTT CTTGCATATACTATGTATGATAAGGACAATGACTCCTTTAGATTGTCTGTACGGAATTTGAATTCTGGTGCATTGTGTAGTAAGCCCCAAGCAGATCGAG TTTCGAATTTGGCTTGGGCCAAGGATGGACAAGCATTGTTGTATGTTGTTACTGATCAACATAAGAGGCCTAGTCGAATATATTGTAGCATGATCGGATC AACCGAGGAAGATGTTTTGCTTCTAGATGAGCCAGCAGAAAATGTTTATGTTAACATACGACACACGAAGGATTTCCGCTTTGTGACTGTAAATACTTTC TCTACAACATTCTCAAAGGTCTTTCTCATAAATGCAGCCGATCCATTATCTGGCATTACTTTAGTTTGGGAATGTGAAGCTCAAGCCCACTGCATAGTTG AACATCATCAAGGATACCTTTACTTGTTTACTGATGCTGCCAGAAGGGGCCAATTGGTTGATCATCACTATCTTCTTCGATGTCCAGTTAATGCTTCTTC TGGTCCAAGGATCTGGGAGAGAGTATTTGATGATGACCGAGATATGGTTATTGAAGATGTTGATTTCTGTAATACACACTTGACACTAATCATACGGGAA AAATGCAGCTTTAGACTTTGTTCAGTTCCTCTACCTATGCCTGCTAGGAAGGATGCAGTTAGACTGAAAGAACTTAACCCTACTTTCCTTCCTCTTCCAA ATCATGTTTCTCAAATTTGGCCTGGACCAAATTATGACTACTACTCATCAACCATGCGCTTTACCATATCATCACCTGTGATGCCTGACGCCGTAGTTGA TTATGAGCTGTCAAGTGGCAATTGGAATATTGTCCAACAGCAAAATTTGCTCTATGAAAGAACAAGAATTTTGTATGGGACAACCTCCTCAGGAGGCATT GCCAATGGATCCTCGAATAATTTGAACTCTGATTTTCTAAATGAAATCAAATCTGAAGATGATAACTTGTGGAATTGCCTCTCAGAGTTTTATGCTTGCG AACAATATGATGTCTCCTCATATGATGGAGTTATGGTTCCTTTAACAATTCTGTACTCACGCAAAAACAAAAATAATAATCAAAATCCTGGTTTGCTTCA TGGGCATGGAGCTTATGGTGAGTTACTTGACAAGCGGTGGCGCAATGATTTGAAAAGCCTTCTTGATCGTGGTTGGGTTATTGCATATGCTGATGTTAGA GGTGGAGGTGGTCATGGTAAGGCATGGCATCATAATGGTAGACAACAGAAGAAACTTAATTCAATCAAAGATTTTGTCTCCTGTGCCAAGTTCCTCGTTG AAAATGAGTTTGTGCAAGAAAACAAGCTTGCTGGTTGGGGATATAGTGCTGGAGGACTTTTGGTGGCTGCTGCCATTAATAGTTGCCCAGATTTATTTCG TGCTGCCATTTTGAAGGTTCCCTTTTTAGATGCAACCAGCACTCTTCTCCATCCCATTTTACCACTCACAGCAGCTGACTATGAAGAGTTTGGGTGTCCA GGGGACATTGATGATTTTCATGCCATAATGAAATATTGTCCTTATGCCAATATTCAGAAAGATGTCCTTTATCCTGCCGTGTTGATAACCTCGTCCTTTA ATACACGATTTGGGGTTTGGGAAGCAGCAAAATGGGCTGCACGAGTTCGTGAACATACTATTTATGATCCCAAACGCCCGATACTACTTAACTTAACTAC GGATATAGTGGAGGAAAACAGATACCTGCAATGCAAGGAATCAGCATTAGAAACTGCATTTCTTATAAAGATGATGGAATCATAA
AA sequence Show only first row Show all	>Potri.007G035900.1 pacid=42764891 polypeptide=Potri.007G035900.1.p locus=Potri.007G035900 ID=Potri.007G035900.1.v4.1 annot-version=v4.1 MRHLLTTTFHRHNHRLPTILHHLLIRHYRPPKPPAPPAPPKHPKPPQKPQSFTFHDATWEDPYSWMSHLNDKVAMRHMDIYMEQEEKYTEAVMSDTEKLQ SKLQSEMASRLHFDLSTSPIRWGPWLYYKRVEAGKQYPVLCRRLASLNEQFISNKDPSGGFDFVSGRKIEQKMVDYNLEAERFGGYAYEELSEVSPDHKF LAYTMYDKDNDSFRLSVRNLNSGALCSKPQADRVSNLAWAKDGQALLYVVTDQHKRPSRIYCSMIGSTEEDVLLLDEPAENVYVNIRHTKDFRFVTVNTF STTFSKVFLINAADPLSGITLVWECEAQAHCIVEHHQGYLYLFTDAARRGQLVDHHYLLRCPVNASSGPRIWERVFDDDRDMVIEDVDFCNTHLTLIIRE KCSFRLCSVPLPMPARKDAVRLKELNPTFLPLPNHVSQIWPGPNYDYYSSTMRFTISSPVMPDAVVDYELSSGNWNIVQQQNLLYERTRILYGTTSSGGI ANGSSNNLNSDFLNEIKSEDDNLWNCLSEFYACEQYDVSSYDGVMVPLTILYSRKNKNNNQNPGLLHGHGAYGELLDKRWRNDLKSLLDRGWVIAYADVR GGGGHGKAWHHNGRQQKKLNSIKDFVSCAKFLVENEFVQENKLAGWGYSAGGLLVAAAINSCPDLFRAAILKVPFLDATSTLLHPILPLTAADYEEFGCP GDIDDFHAIMKYCPYANIQKDVLYPAVLITSSFNTRFGVWEAAKWAARVREHTIYDPKRPILLNLTTDIVEENRYLQCKESALETAFLIKMMES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66960			Prolyl oligopeptidase family p...		Potri.007G035900 [exp]	0	1
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Potri.014G164900 [exp]	1.00	0.9072
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.013G008900 [exp]	5.47	0.8360	Pt-LON_ARA_ARA.1
AT3G04800		ATTIM23-3	translocase inner membrane sub...		Potri.005G051800 [exp]	6.48	0.8286
					Potri.002G154150 [exp]	6.78	0.8556
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.006G188600 [exp]	11.04	0.7242	AHA6.4
AT1G26370		RID1	RNA helicase family protein (....		Potri.008G096800 [exp]	11.61	0.8139
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Potri.011G093000 [exp]	16.24	0.7787	TIM50.1
AT5G19130			GPI transamidase component fam...		Potri.001G345200 [exp]	19.49	0.7430
AT1G66510			AAR2 protein family (.1.2.3)		Potri.017G123900 [exp]	20.09	0.8379
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Potri.002G142700 [exp]	24.18	0.6947	BSTCP.2

Compare expression of checked genes

Potri.007G035900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.