Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23520 1235 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G37100 1209 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G66950 1110 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G51920 305 / 1e-92 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G22980 225 / 9e-64 unknown protein AT1G16540 81 / 2e-15 ACI2, ABA3, SIR3, LOS5, ATABA3 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G131300 [exp] 1716 / 0 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G137900 [exp] 313 / 5e-95 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G111600 [exp] 280 / 7e-83 AT4G22980 431 / 2e-144 unknown protein Potri.003G120500 [exp] 280 / 8e-83 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G097000 [exp] 93 / 7e-20 AT4G37100 97 / 9e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.012G098200 [exp] 90 / 7e-19 AT4G37100 95 / 4e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G172100 [exp] 86 / 2e-17 AT5G51920 91 / 1e-19 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G066400 [exp] 77 / 5e-14 AT1G16540 1071 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Potri.001G056400 [exp] 55 / 3e-08 AT5G51920 59 / 1e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016776 [exp] 1445 / 0 AT2G23520 1229 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022472 [exp] 1438 / 0 AT2G23520 1238 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10019650 [exp] 1346 / 0 AT4G37100 1186 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000751 [exp] 1292 / 0 AT4G37100 1141 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10038892 [exp] 285 / 7e-85 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10015013 [exp] 273 / 2e-80 AT5G51920 570 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10006342 [exp] 267 / 9e-78 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10002958 [exp] 226 / 9e-63 AT5G51920 396 / 5e-130 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022447 [exp] 91 / 1e-19 AT2G23520 96 / 1e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016752 [exp] 92 / 2e-19 AT2G23520 96 / 5e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G036100.1 pacid=42765925 polypeptide=Potri.007G036100.1.p locus=Potri.007G036100 ID=Potri.007G036100.1.v4.1 annot-version=v4.1 ATGCATCTTTCACTGTGGAAACCTATATCTCACTGTGCTGCTCTGCTGTTAGACAAGAAGAGCAGAAGGAAAGATGGGTCTGAATCCAGTCTTGAAATCA AGAGGAACTCATCAATTCTTCGAAAACTTCAAGAACACAAGCTCAGGGAGGCACTTGAAGAAGCATCTGAAGATGGGTCACTCGTCAAATCTCAAGATAT GGAGTCTGACACTCTTGCAAACCAAGATGAGAGTCTTGGGAGGTCAAGATCACTAGCAAGGCTCCATGCGCAGCGAGAATTCTTGCGTGCCACAGCGCTA GCTGCTGAACGAATATTTGAGAATGAAGATTCTATACCTGACCTTCTTGAGGCATTTTCCAAGTTCCTCACGATGTATCCAAAGTATCAGTCGTCAGAGA AGGTTGATCAGTTAAGGTTAGATGAATATGCACATTTGTCTCCAAAGGTATGCCTTGATTACTGTGGATTTGGGCTTTTTTCATATCTTCAGTCTTTGCA TTATTGGGAGTCTTCAACATTTAGCTTATCGGAGATAACTGCCAATTTGAGTAACCATGCTCTGTATGGTGGTGCTGAGAAGGGCACTGTGGAACATGAT ATAAAGACTAGAATAATGGATTATTTGAATATCCCTGAGCATGAGTATGGTCTTGTTTTCACTGTGAGTAGAGGCTCGGCCTTTAAATTACTTGCTGAAT CGTACCCTTTTCATACCAATAAGAAGCTGTTGACCATGTTTGATTACGAGAGCCAGTCTGTGAATTGGATGGCTCAAAGTGCCAAAGAGAAGGGCGCAAA AGTCTATAGTGCATGGTTTAAATGGCCAACTCTTAAACTTTGTTCCACTGATTTGAGAAAGCAAATTTTGAACAAGAAGAGGAGGAAGAAGGATTCTGCA GTTGGTTTGTTTGTATTTCCAGTGCAGTCAAGAGTTACTGGGGCAAAGTATTCGTACCAGTGGATGGCGCTGGCTCAACAGAACCGTTGGCACGTATTGC TTGATGCTGGTTCATTGGGTCCTAAAGATATGGATTCACTTGGTTTGTCCTTGTTCCGTCCTGACTTCATTATCACATCATTTTACAAAGTATTCGGACA TGACCCCACTGGTTTTGGATGTCTTCTTATCAAGAAATCAGTGATGGGAAGCCTCCAAAATCAGTCTGGGAGTACAGGGTCTGGAATGGTAAAGATTACA CCTGAGTATCCTATGTATTTGAGTGATTCTGTGGATGGGCTGGATGGGTTGGTTGGTGTTGAAGATGACGAGGTTGCTGGGAATGCTGAAAAAACCACAG AAATTCGCCCAGGATCACAGTTGCCTGCCTTTTCTGGTGCTTTCACATCTGCTCAGGTGAGGGATGTATTCGAGACTGAGATGGATCATGAGAACAGTTC TGACAGAGATGGAACAAGCACTATATTTGAAGAAACTGAAAGTATTTCAGTGGGGGAAGTGATGAAAAGCCCTGTCTTTAGTGAAGATGAATCGTCAGAC AACTCATTCTGGATTGATTTGGGTCAGAGTCCCTTGGGATCAGACAGTGCTGGCCAATTGAACAAGCAGAAACTGGCCTCTCCGTTACCACCTTTCTGGT TTTCTGGCAAGAAGAACAACAAGCGACTCTCTCCAAAACCAACATCTAAGATATATGGCAGCCCAATGTATGATGACAAAGGGGTAAACTTGGGGTCACA TGATGACCACCATATGTTGTCATTTGATGCTGCTGTTCTATCAGTTTCACAGGAACTGGACCGTGTTAAGGAGGTTCCTGAAGAAGAACAATTTTCAGAA ACAGACCTCTCTTCAAGAAATAATAAGGGCTCAGATCATTTGCATGTTCATGAGATTGAGGAAGAACCGGGAATCAGCTCCTTTTCAAACTCCGCCATAA ACAGATCCCATAACAATAATTCAACCTCTGGATCGCATCATAACCTAACAAATGGCTCAACTGCTGCAATTTGCTCGGAGATGAAAGAAAGTGCTATAAG ACGAGAAACAGAAGGTGAATTCAGGTTGTTGGGGAGAAGGGAAGGGAGTAGATATGCTGGTAGTAGATTCTTCGGGTTGGAAGAGAATGAACATCCAAGC AGGGAAAGAAGGGTATCATTTAGCATGGAGGACAACCGCAAAGAGCGTCCAAGCCATACTCTGGAGCCAGGAGAGATATCTGCTACCAGCCTCGACGATG AAGATTACAGCACTGATGGAGAATATGTTGATGGTCAAGATTGGGATCGAAGGGAACCTGAGATAACTTGCCGACATTTGGATCATGTGAATATGTTGGG TCTGAACAAAACTACTCTCCGGCTGAGATTTTTGATCAACTGGCTAGTAACTTCTTTACTTCAACTCAGGTTACCCAGTTCAGATGGAGATGGAAGGGTA AATCTTGTACACATTTATGGCCCAAAAATAAAATATGAAAGGGGTGCAGCTGTAGCTTTCAATGTCAGAGATAGAAACCGGGGGCTAATAAATCCAGAAG TTGTTCAGAAGCTGGCTGAAAGAGAAGGTATCTCTCTTGGCATTGGTTTCCTTAGTCACATAAGGATTCTAGATAGCCCAAGACAGCAACGTGGTTCTGT GAACCTTGAAGATACGACTCTGTGCAGACCAATGGAAAACGGGCATAATAACGGAAAAGGTGGGTTCATAAGGGTTGAGGTTGTCACAGCATCTCTCGGA TTTCTGACCAACTTTGAGGATGTCTACAAGTTGTGGGCTTTTGTTTCCAAGTTTCTTAATCCAACCTTTATCAGCGAGGGTGGCCTTCCAACTGTTGAAG AGGGCACGGAGGTTTGA
AA sequence Show only first row Show all	>Potri.007G036100.1 pacid=42765925 polypeptide=Potri.007G036100.1.p locus=Potri.007G036100 ID=Potri.007G036100.1.v4.1 annot-version=v4.1 MHLSLWKPISHCAALLLDKKSRRKDGSESSLEIKRNSSILRKLQEHKLREALEEASEDGSLVKSQDMESDTLANQDESLGRSRSLARLHAQREFLRATAL AAERIFENEDSIPDLLEAFSKFLTMYPKYQSSEKVDQLRLDEYAHLSPKVCLDYCGFGLFSYLQSLHYWESSTFSLSEITANLSNHALYGGAEKGTVEHD IKTRIMDYLNIPEHEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMAQSAKEKGAKVYSAWFKWPTLKLCSTDLRKQILNKKRRKKDSA VGLFVFPVQSRVTGAKYSYQWMALAQQNRWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYKVFGHDPTGFGCLLIKKSVMGSLQNQSGSTGSGMVKIT PEYPMYLSDSVDGLDGLVGVEDDEVAGNAEKTTEIRPGSQLPAFSGAFTSAQVRDVFETEMDHENSSDRDGTSTIFEETESISVGEVMKSPVFSEDESSD NSFWIDLGQSPLGSDSAGQLNKQKLASPLPPFWFSGKKNNKRLSPKPTSKIYGSPMYDDKGVNLGSHDDHHMLSFDAAVLSVSQELDRVKEVPEEEQFSE TDLSSRNNKGSDHLHVHEIEEEPGISSFSNSAINRSHNNNSTSGSHHNLTNGSTAAICSEMKESAIRRETEGEFRLLGRREGSRYAGSRFFGLEENEHPS RERRVSFSMEDNRKERPSHTLEPGEISATSLDDEDYSTDGEYVDGQDWDRREPEITCRHLDHVNMLGLNKTTLRLRFLINWLVTSLLQLRLPSSDGDGRV NLVHIYGPKIKYERGAAVAFNVRDRNRGLINPEVVQKLAEREGISLGIGFLSHIRILDSPRQQRGSVNLEDTTLCRPMENGHNNGKGGFIRVEVVTASLG FLTNFEDVYKLWAFVSKFLNPTFISEGGLPTVEEGTEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Potri.007G036100 [exp]	0	1
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Potri.005G118200 [exp]	6.48	0.6958	SHI2,Pt-STY1.2
AT5G09760			Plant invertase/pectin methyle...		Potri.007G107300 [exp]	8.66	0.6101
AT3G22440			FRIGIDA-like protein (.1)		Potri.008G153000 [exp]	10.77	0.6692
AT3G54720		MFO1, HPT, COP2...	PRIMORDIA TIMING, Multifolia, ...		Potri.016G064300 [exp]	11.22	0.6749
AT3G30390			Transmembrane amino acid trans...		Potri.004G111400 [exp]	18.76	0.6122
AT5G62620			Galactosyltransferase family p...		Potri.010G040400 [exp]	21.21	0.6546
AT4G23500			Pectin lyase-like superfamily ...		Potri.001G100000 [exp]	26.26	0.6251
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Potri.010G163800 [exp]	28.72	0.6346
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Potri.012G081500 [exp]	28.80	0.6445
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Potri.012G092400 [exp]	29.52	0.6494

Compare expression of checked genes

Potri.007G036100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.