Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23530 318 / 3e-101 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT4G37110 291 / 8e-93 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT1G67270 109 / 4e-25 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT1G67780 106 / 3e-24 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT5G38690 89 / 2e-18 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT1G09060 54 / 4e-07 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G108400 [exp] 266 / 2e-83 AT2G23530 253 / 8e-79 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.006G257400 [exp] 107 / 5e-24 AT5G38690 270 / 2e-81 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Potri.018G024400 [exp] 101 / 3e-22 AT5G38690 271 / 1e-81 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Potri.012G044400 [exp] 82 / 3e-17 AT4G37110 96 / 2e-22 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.013G019000 [exp] 53 / 4e-07 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.005G091200 [exp] 45 / 0.0001 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019647 [exp] 322 / 3e-104 AT2G23530 301 / 5e-97 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10000845 [exp] 318 / 7e-103 AT2G23530 303 / 8e-98 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10023846 [exp] 254 / 9e-80 AT2G23530 272 / 2e-87 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10021004 [exp] 109 / 7e-28 AT4G37110 110 / 7e-29 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10017575 [exp] 104 / 3e-23 AT5G38690 409 / 8e-137 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Lus10033539 [exp] 103 / 8e-23 AT5G38690 405 / 2e-134 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Lus10037812 [exp] 50 / 8e-06 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10017092 [exp] 50 / 8e-06 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10497 [poplar] [flax] zf-4CXXC_R1 Zinc-finger domain of monoamine-oxidase A repressor R1
Representative CDS sequence Show only first row Show all	>Potri.007G036200.1 pacid=42766326 polypeptide=Potri.007G036200.1.p locus=Potri.007G036200 ID=Potri.007G036200.1.v4.1 annot-version=v4.1 ATGTCAACTTTGAGAAAGAGAAGGCCACGAGATCACCAAGAGCCCAACAAAAACACAAAGCCAAATGAAGAAATCAACAACAATGAGCACCACGAAACCC CAAAGATTTCTGTCTACGAACAAACGAGAGAAGAAAGAATCAAAGAAAACCTCGAAAGAATGCAAAAACTTGGTCTCATGGACCTTTCTCTCAAGCTCAA GGCTTGCACTGCTCCTCCTAAAAGAACTCCAAGGACAAGCCCTTCCTCGACAAAACACCCCACTCCCTTTCTGCCACGTGGGCCTCTTCGCCGTTCCTCT AGGTTGCAAAATTCAACTCCAGTTAGTTACTCAGAAGTGGCATTGACTAAGAAAGATGGATTGTTAGAGGATGAGAATATAATGCAAGAGGTGGGATCAA AGCCTGAGATATACACGGAAGAGCATGAGAAGCTGTTAGGAAACACCGAGAGGAGCTGGACGCTTTTTGTGGATGGGTGTGGGAAGGATGGAAAGAGAAT TTATGATCCGATAAATGGAAAGACTTGCCACCAATGCAGGCAGAAAACTCTTGGTTATCGTACTCACTGCTGCGAATGCAAGATGGTCCAGGGACAGTTC TGTGGAGATTGTTTGTACATGAGATATGGGGAGCATGTACTTGAAGCCTTGGAAAATCCGAATTGGTTATGCCCTGTATGTCGTGGAATTTGCAACTGCA GTTTGTGCCGACAAGCAAAAGGGTGGCCTCCCACTGGCACTCTTTATAGGAAGATATCAAGTTTGGGCTACAAGTCCGTTGCACACTATCTCATCCAAAC CAAGCGCCTACAAAACACTGCCAATGAAGTTTCTGCAAAAAGGTCACTGCCCTTTTCCAACATGGAAGTGGTGTCCAAAGAATCTCCACAGTTCATTTAT AAAACAGCTGAGCAATTAGAGCATCAATCTGAAGACAAAATACTTGATGAGTTAAAGAGCAAGACAGAGAACAAAATATCAAGCAGCAGAAATCTGGCTA ATGATGGTCAGACAAAAAGGGCATTGACTTTTTCAAGCAGTGAAGTGAAGTCTGAGAATGTGGAATATGCAAAGGTCAACCATGAGGTTCATGACAACCT TGGTTTATCGAAGCCTCAATGTGAGGAAATGAATAACGAGAAGCACGTGCAAAGCAATGGAAATCGTGCTACAGCTTGTCAGACAGACAAGTCATTGACA TTTTCTGGAAGTGAAGCAAGGTCCAAGAAAGTTGAATCTGCTGGCACCCATGAGATTCTTGACGATCTTGCATTATCAATGCCTAAATTTGAAGACATGT ATGAAAATGAATTTAGAAGTGAGGAAGAGAAGAAAGAAACACGCATCTGCCATGTGATTCATGATGATCTTGCATTATCAATGCCAAAATTTGAAGGCAA TATTCCATCTGAAAGTTGCCTGAAACATAAAAGGAAACACGCATCTGCCATCAACCCAAGTCCAGATAGTATTGCTGCAAGATTAAGGCAGAGACGTTGG AAAAGTAATGGCAAAGATGATGCAGAGTTCATGGGGGTGGATGAGAAAGCCTCTAATGTTAAACCAGCTGTAAATGTCATGTCATCAAGCCAAAACATGG AGGAAGAAAATGAAATGCATGTTGAGGATGATAAACGTGTTGTATTGGAGAGCAGTCAGCTCAAGAAGCGTACTCATGCTGAACCAAACCCAGATAGTAT TGGCGCAAGATTGAGACAGAGGCATAGAATGGGCAAAGGCCATGAAAACAACGAGTTGCCGGGGACAAGATTGAGAAGTAGATGTTAG
AA sequence Show only first row Show all	>Potri.007G036200.1 pacid=42766326 polypeptide=Potri.007G036200.1.p locus=Potri.007G036200 ID=Potri.007G036200.1.v4.1 annot-version=v4.1 MSTLRKRRPRDHQEPNKNTKPNEEINNNEHHETPKISVYEQTREERIKENLERMQKLGLMDLSLKLKACTAPPKRTPRTSPSSTKHPTPFLPRGPLRRSS RLQNSTPVSYSEVALTKKDGLLEDENIMQEVGSKPEIYTEEHEKLLGNTERSWTLFVDGCGKDGKRIYDPINGKTCHQCRQKTLGYRTHCCECKMVQGQF CGDCLYMRYGEHVLEALENPNWLCPVCRGICNCSLCRQAKGWPPTGTLYRKISSLGYKSVAHYLIQTKRLQNTANEVSAKRSLPFSNMEVVSKESPQFIY KTAEQLEHQSEDKILDELKSKTENKISSSRNLANDGQTKRALTFSSSEVKSENVEYAKVNHEVHDNLGLSKPQCEEMNNEKHVQSNGNRATACQTDKSLT FSGSEARSKKVESAGTHEILDDLALSMPKFEDMYENEFRSEEEKKETRICHVIHDDLALSMPKFEGNIPSESCLKHKRKHASAINPSPDSIAARLRQRRW KSNGKDDAEFMGVDEKASNVKPAVNVMSSSQNMEEENEMHVEDDKRVVLESSQLKKRTHAEPNPDSIGARLRQRHRMGKGHENNELPGTRLRSRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23530			Zinc-finger domain of monoamin...		Potri.007G036200 [exp]	0	1
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129900 [exp]	2.64	0.9309	Pt-SOM1.1,CHR905
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	5.65	0.9271
AT3G09080			Transducin/WD40 repeat-like su...		Potri.006G096400 [exp]	6.63	0.9173
AT2G25220			Protein kinase superfamily pro...		Potri.001G048500 [exp]	6.92	0.8857
AT3G26050			TPX2 (targeting protein for Xk...		Potri.010G053200 [exp]	7.74	0.9130
AT3G26050			TPX2 (targeting protein for Xk...		Potri.008G180900 [exp]	8.94	0.8665
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Potri.014G084200 [exp]	9.48	0.9039
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.010G031800 [exp]	9.89	0.8979
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.001G264000 [exp]	9.94	0.9240	TOP2.2
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.001G125000 [exp]	10.95	0.9158

Compare expression of checked genes

Potri.007G036200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.