Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23540 555 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 502 / 3e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 278 / 4e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 249 / 5e-80 GLIP7 GDSL-motif lipase 7 (.1) AT5G08460 248 / 4e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 239 / 1e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G04290 236 / 6e-75 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT4G28780 236 / 8e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 230 / 2e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G16230 226 / 2e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G104600 [exp] 377 / 3e-130 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104700 [exp] 297 / 1e-98 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 245 / 2e-78 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024600 [exp] 245 / 3e-78 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024800 [exp] 241 / 3e-76 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G067600 [exp] 239 / 8e-76 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G051100 [exp] 239 / 8e-76 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G076600 [exp] 239 / 9e-76 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.012G068700 [exp] 238 / 1e-75 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016775 [exp] 616 / 0 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 612 / 0 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 365 / 4e-125 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005236 [exp] 363 / 1e-124 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005238 [exp] 359 / 1e-122 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 248 / 5e-79 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10002775 [exp] 233 / 9e-74 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 232 / 3e-73 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 231 / 8e-73 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 231 / 9e-73 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.007G036300.1 pacid=42765762 polypeptide=Potri.007G036300.1.p locus=Potri.007G036300 ID=Potri.007G036300.1.v4.1 annot-version=v4.1 ATGGCCACGATAATCTACACCTTGGCCTTGGTGCTTTTTGTCGTGGATTTGAGCTATTTTGGAAAGGTAGCTTGTGATAATTCTGCTTTAGGAGCTTCTT TTATATTTGGTGATTCCCTAGTTGATGCTGGAAACAACAATTATCTACCAACTTTGTCCAAGGCCAATATCAAGCCTAATGGCATTGATTTTAAAGCATC CGGCGGAAACCCTACCGGCCGGTATACCAATGGGAGAACCATTGGTGACATTGTAGGGGAAGAACTAGGACAACCAAACTATGCTCACCCGTTTTTGTCT CCAAACACCACTGGAAAAGCTATATTATATGGCGTGAATTATGCATCCGGAGGAGGAGGGATTATGAATGGAACTGGAAGAATATTTGTTAATAGGCTAG GAATGGATGTACAAATTGACTACTTCGCAATTACTAGAAAGCAGTTCGATAAATTGCTGGGTGCATCCCAGGCAAGAGATTATATCATGAAGAAATCCAT CTTCTCTATTACAGTTGGAGCAAATGATTTCCTCAACAATTATCTACTTCCAGTTCTCTCTATTGGAGCAAGGATTTCTGAAAGTCCTGATGCATTCATT GATGACATGCTCAGTCACTTTAAAGGCCAACTTACGAGACTATACAAAATGGATGCTCGAAAATTTGTAATCGGGAACGTTGGCCCGATAGGTTGCATTC CATATCAAAAGACAATAAATCAATTAAGCGAAAATGAATGCGTGGGATTGGCAAATAAGCTAGCAGTTCAGTATAATGGACGATTGAAAGATTTACTTGC TGAACTAAATGAAAACCTTCCAGGAGCTACATTTGTTCTTGCTAATGTGTATGATATGGTGATGGAACTCATCACAAATTATGAAAAATATGGATTTACA ACATCAAGTAGAGCTTGTTGTGGAAATGGAGGGCAATTTGCAGGGATAATTCCATGTGGACCAACGTCAACCTTGTGCGAAGATCGATCCAAGCATGTGT TCTGGGATCCTTATCATCCAAGTGAGGCTGCCAACGTTATAATTGCCAAGAAACTGTTGGATGGAGATACAAAATACATATCTCCCGTGAATCTCAGGCA ACTTCGAGATCTTTGA
AA sequence Show only first row Show all	>Potri.007G036300.1 pacid=42765762 polypeptide=Potri.007G036300.1.p locus=Potri.007G036300 ID=Potri.007G036300.1.v4.1 annot-version=v4.1 MATIIYTLALVLFVVDLSYFGKVACDNSALGASFIFGDSLVDAGNNNYLPTLSKANIKPNGIDFKASGGNPTGRYTNGRTIGDIVGEELGQPNYAHPFLS PNTTGKAILYGVNYASGGGGIMNGTGRIFVNRLGMDVQIDYFAITRKQFDKLLGASQARDYIMKKSIFSITVGANDFLNNYLLPVLSIGARISESPDAFI DDMLSHFKGQLTRLYKMDARKFVIGNVGPIGCIPYQKTINQLSENECVGLANKLAVQYNGRLKDLLAELNENLPGATFVLANVYDMVMELITNYEKYGFT TSSRACCGNGGQFAGIIPCGPTSTLCEDRSKHVFWDPYHPSEAANVIIAKKLLDGDTKYISPVNLRQLRDL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.007G036300 [exp]	0	1
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.001G249700 [exp]	1.00	0.9874	CYP86.5
AT4G20390			Uncharacterised protein family...		Potri.011G154900 [exp]	3.46	0.9783
AT1G53270		ABCG10	ATP-binding cassette G10, ABC-...		Potri.001G393300 [exp]	3.87	0.9750	3
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.009G043700 [exp]	4.47	0.9743	CYP86A19,Pt-CYP86.4
AT5G14020			Endosomal targeting BRO1-like ...		Potri.017G062000 [exp]	5.47	0.9411
AT1G68850			Peroxidase superfamily protein...		Potri.010G134500 [exp]	5.91	0.9707
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Potri.007G072100 [exp]	8.48	0.9659
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Potri.005G092200 [exp]	9.53	0.9644
AT3G24240			Leucine-rich repeat receptor-l...		Potri.003G175700 [exp]	10.24	0.9294
AT1G29000			Heavy metal transport/detoxifi...		Potri.014G178800 [exp]	10.58	0.9591

Compare expression of checked genes

Potri.007G036300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.