Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-OBP1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50410 171 / 2e-52 DOF OBP1, AtDof3. 4 OBF binding protein 1 (.1) AT5G66940 132 / 8e-38 DOF AtDof5. 8 Dof-type zinc finger DNA-binding family protein (.1) AT1G51700 119 / 3e-33 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT5G60200 108 / 1e-28 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT3G21270 107 / 1e-28 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1) AT5G65590 109 / 2e-28 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT5G60850 108 / 5e-28 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT1G47655 106 / 5e-28 DOF Dof-type zinc finger DNA-binding family protein (.1) AT1G07640 107 / 6e-28 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT3G61850 107 / 6e-28 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G131600 [exp] 250 / 8e-84 AT3G50410 126 / 3e-35 OBF binding protein 1 (.1) Potri.014G036600 [exp] 123 / 7e-34 AT1G47655 128 / 2e-36 Dof-type zinc finger DNA-binding family protein (.1) Potri.003G034200 [exp] 117 / 4e-32 AT1G51700 136 / 7e-40 DOF zinc finger protein 1 (.1) Potri.012G063800 [exp] 114 / 4e-30 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1) Potri.007G038100 [exp] 113 / 1e-29 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.015G048300 [exp] 113 / 2e-29 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.005G134200 [exp] 111 / 5e-29 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.001G238400 [exp] 111 / 5e-29 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.003G144500 [exp] 110 / 8e-29 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015425 [exp] 111 / 4e-29 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10014001 [exp] 110 / 1e-28 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10005956 [exp] 110 / 3e-28 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3) Lus10029458 [exp] 110 / 3e-28 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10035504 [exp] 105 / 3e-28 AT1G51700 134 / 3e-40 DOF zinc finger protein 1 (.1) Lus10027797 [exp] 105 / 1e-27 AT1G51700 125 / 2e-36 DOF zinc finger protein 1 (.1) Lus10016566 [exp] 107 / 2e-27 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10034652 [exp] 105 / 5e-27 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10010113 [exp] 106 / 7e-27 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10003207 [exp] 106 / 8e-27 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.007G036400.1 pacid=42765196 polypeptide=Potri.007G036400.1.p locus=Potri.007G036400 ID=Potri.007G036400.1.v4.1 annot-version=v4.1 ATGCCGGCAGAATTATCAAGCAGCGAAGCAGCAAGGAGAGCACAACAATCGACAGCTGCAACTTTAACTAAGCCAGGAGGAGCACCACCTCAAGAACAAG AGCACTTGCCATGTCCACGTTGTGACTCAACGAATACTAAGTTTTGTTACTACAACAACTACAACTTCTCTCAGCCTCGTCACTTCTGTAAGTCTTGCCG CCGTTACTGGACTCACGGTGGCACCCTCCGGGACATTCCTGTTGGTGGTGGCACTCGGAAAAATGCTAAAAGGTCACGTACGTCAGCTACTTCTCCTGCC TCCTTCATGGGTCCTATGACAGGCACTAATATTGATGGCTTACCACTGCCTGCTACCCCAGTGCTGCTCCCACTCACAGCCAATCAGGGTTTGTCCGTCC ACTTTGGTGGTGGTGATGGGAAGGGTAACGGTGGTGGTCTGGGTGGGAGTTTTACTTCTTTGTTGAATACTCAAGGCCCAGCTGGGTTCTTGGCTCTTAA TGGGTTTGGTCTTGGAATTGGGCCTGGGATTGAAGATGTGAACTTCGCTCTTGGAAGAGGGCTGTGGCCTTTTCCGGGAATGGGAGATGTTGGCGCTTCC GTAGGTGGTAATGGTGGGGCTGCCGTCACAGCTGGACTGGGCAACACATGGCAGTTTGAGAATGGTCAGGAAAATGGGTTTGTCGGCGGGGATTGCTTTT CTTGGCCTGATCTTGCTATTTCAACTCCTGGGAATGGTCTTAAATGA
AA sequence Show only first row Show all	>Potri.007G036400.1 pacid=42765196 polypeptide=Potri.007G036400.1.p locus=Potri.007G036400 ID=Potri.007G036400.1.v4.1 annot-version=v4.1 MPAELSSSEAARRAQQSTAATLTKPGGAPPQEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGTRKNAKRSRTSATSPA SFMGPMTGTNIDGLPLPATPVLLPLTANQGLSVHFGGGDGKGNGGGLGGSFTSLLNTQGPAGFLALNGFGLGIGPGIEDVNFALGRGLWPFPGMGDVGAS VGGNGGAAVTAGLGNTWQFENGQENGFVGGDCFSWPDLAISTPGNGLK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50410	DOF	OBP1, AtDof3. 4	OBF binding protein 1 (.1)		Potri.007G036400 [exp]	0	1	Pt-OBP1.1
AT3G61920			unknown protein		Potri.002G178900 [exp]	1.00	0.8651
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Potri.004G079100 [exp]	1.41	0.8588
AT3G23805		RALFL24	ralf-like 24 (.1)		Potri.001G320700 [exp]	2.44	0.8527
AT1G04635		EMB1687	EMBRYO DEFECTIVE 1687, ribonuc...		Potri.015G001000 [exp]	3.16	0.8385
AT2G34060			Peroxidase superfamily protein...		Potri.004G052100 [exp]	5.19	0.8234
AT1G45207			Remorin family protein (.2)		Potri.014G027900 [exp]	10.00	0.8401
AT1G12845			unknown protein		Potri.017G060400 [exp]	11.31	0.7999
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.015G062800 [exp]	18.97	0.8255
AT5G59350			unknown protein		Potri.010G206100 [exp]	21.23	0.8188
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Potri.004G075200 [exp]	21.81	0.8038	Pt-GAD.2

Compare expression of checked genes

Potri.007G036400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.