Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PCBER5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39230 407 / 9e-144 NmrA-like negative transcriptional regulator family protein (.1) AT1G75280 368 / 3e-128 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 360 / 6e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75300 357 / 8e-124 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 317 / 3e-108 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 254 / 3e-83 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 214 / 8e-68 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 214 / 2e-67 ATPRR2 pinoresinol reductase 2 (.1) AT5G18660 47 / 8e-06 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G33360 42 / 0.0003 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G168400 [exp] 465 / 5e-166 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118100 [exp] 451 / 5e-161 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 423 / 7e-150 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 384 / 2e-134 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 379 / 1e-132 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.004G156650 [exp] 293 / 7e-100 AT4G39230 322 / 1e-111 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 278 / 1e-92 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G123700 [exp] 253 / 1e-82 AT1G75280 284 / 4e-95 NmrA-like negative transcriptional regulator family protein (.1) Potri.013G103701 [exp] 244 / 2e-79 AT1G75280 271 / 4e-90 NmrA-like negative transcriptional regulator family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026350 [exp] 407 / 2e-143 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 397 / 2e-139 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 395 / 2e-138 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 387 / 8e-136 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 379 / 1e-132 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 373 / 5e-128 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 315 / 7e-108 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10023558 [exp] 281 / 8e-94 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1) Lus10042312 [exp] 232 / 3e-75 AT4G39230 253 / 1e-83 NmrA-like negative transcriptional regulator family protein (.1) Lus10040443 [exp] 212 / 5e-67 AT4G34540 290 / 5e-98 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.007G036500.1 pacid=42765497 polypeptide=Potri.007G036502.1.p locus=Potri.007G036500 ID=Potri.007G036500.1.v4.1 annot-version=v4.1 ATGGCAGATAAAAGCAAGATTCTACTCATTGGAGGCACAGGATACATAGGAAAATTCATTGTAGAAGCAAGTATCAAGGAAGGCCACCCAACTTTTGTTC TTGTCAGAGAGTCCACTCTCTCTCTCTCTAGCCCTGCAAAATCCATTGTCATTAACAACTTCAATAATCTTGGTGTCAATTTCCTAATTGGAGACTTGTT GGATCATGAGAGTTTGGTGAAGGCAATAAAGCAAGTGGATGTTGTGATATCTTCCATTGCTCATGATCAGGTAGATAATCAAGTCAACATCATTGCTGCC ATTAAAGAATCTGGAAATATCAAGAGATTTATCCCATCAGAGTTTACAAATGATGTGGATAGAGCGCATATTGTTGAACCAGCAACAGGATTGGCTGCTT CAAAGGCTAAAATTCGACGAGCTATTGGGGCTGAAGGAATTCCTTACACACATGTGTGGCATCTAATTCTTTCGCTGGCTTCAAGCATTAGGAGCACTGC CGTAACAACAACTTCGAACCAACCTGGAGCTACTGCTTCCCATGGAGATAGACTTGTCATTTTAGGTGATGGAAATGTAAAAGTGGTTTTCAACAAGGAA GAGGACATTGCCACATACACTATCAAAGCAGTGGATGATCCAAGAACAGTGAACAAAATCCTCTACATTAAACCCCCAGCCAACATTATCTCATCCAATG AACTTGTTTCTTTGTGGGAGAAGAAGATAGGGAAAACAATTGAAAGGGTCTATGTTCCAGAGGAGCAAATTTTGAAGAATATTCAAGAAACTTCAGACTT TCTACGCAAACTGACTTTAGCAATTTGCCACTCTTGGTTTGTGAATGGAGATCAGACAAACTTTGAGATTGAGCCATCATTTGGTGTAGAGGCTTCTGAG CTATACCCTGATGTCAAATACACTACTGTGGATGAATACCTTAACCAGTTTGTTTGA
AA sequence Show only first row Show all	>Potri.007G036500.1 pacid=42765497 polypeptide=Potri.007G036502.1.p locus=Potri.007G036500 ID=Potri.007G036500.1.v4.1 annot-version=v4.1 MADKSKILLIGGTGYIGKFIVEASIKEGHPTFVLVRESTLSLSSPAKSIVINNFNNLGVNFLIGDLLDHESLVKAIKQVDVVISSIAHDQVDNQVNIIAA IKESGNIKRFIPSEFTNDVDRAHIVEPATGLAASKAKIRRAIGAEGIPYTHVWHLILSLASSIRSTAVTTTSNQPGATASHGDRLVILGDGNVKVVFNKE EDIATYTIKAVDDPRTVNKILYIKPPANIISSNELVSLWEKKIGKTIERVYVPEEQILKNIQETSDFLRKLTLAICHSWFVNGDQTNFEIEPSFGVEASE LYPDVKYTTVDEYLNQFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39230			NmrA-like negative transcripti...		Potri.007G036500 [exp]	0	1	PCBER5
AT2G37530			unknown protein		Potri.006G083800 [exp]	3.00	0.9345
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G078600 [exp]	4.24	0.9226
AT2G04031			Protein of unknown function (D...		Potri.009G104800 [exp]	5.29	0.8743
AT5G25810	AP2_ERF	TNY, TINY	TINY, Integrase-type DNA-bindi...		Potri.001G187500 [exp]	5.47	0.9276
AT1G20030			Pathogenesis-related thaumatin...		Potri.001G220900 [exp]	7.07	0.8845
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G063051 [exp]	7.48	0.9376
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G063200 [exp]	8.66	0.9356
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G062950 [exp]	9.48	0.9350
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G063101 [exp]	10.95	0.9346
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G064100 [exp]	12.64	0.9324

Compare expression of checked genes

Potri.007G036500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.