Plant FIBer expression Database

Potri.007G036600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37130 424 / 4e-144 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016774
[exp]
446 / 6e-153 AT4G37130 524 / 0.0 hydroxyproline-rich glycoprotein family protein (.1)
Lus10022470
[exp]
405 / 4e-138 AT4G37130 455 / 4e-158 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence
>Potri.007G036600.4 pacid=42766600 polypeptide=Potri.007G036600.4.p locus=Potri.007G036600 ID=Potri.007G036600.4.v4.1 annot-version=v4.1
ATGGCATTTTCTTTTTCAACTCCACCACAGCAAACCCCATCTCTGTTTCAGCCTCAGCCTCAGCCTTTTCAACAAAGCAGCCCTCTTTTTCCACAGCAGC
AGCAGCAACAACAGCCACAGCAGCAGTTTCAGCAACAGCAGCAGCAGTTTCAGCAACAGCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCA
ACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAGCAACAGCAGCAATTGTATCTTTTTACTAATGACAAGGCTCCTGCAAGTTATAGTACTAAATGG
GAAGATCTTCACCCAGATTCCCAGAAAACTTTGCTTCAGATTGAGGAGCGGATATTGGAGTATAGGGATGAGAGTAAGAGGCTAGATCAGTGTAGTCGCC
TTTACGACTCTTCAGTTTCCAATGAAGGATTTGAGCTTGATGCGAGCCAAATTATTCAGGCATATTTGCAGGAACTTGGGGGAATCAGTACTTCCATGGA
GAGACAGAAAGCTCTTTTACAAGAACTTATGACTAATGTTAAAGACATGTTACGGAACACAGAGATGGCTGTTCGTTCTTTCATGATGTTACATCCTAGA
TTCCTTCATTCTAATGCAGGAGGTGGTGCTTCAAATGCCACAGCACCATCCCAGCCTCCTGGAACAACAGGAATACCTGGTTCCACTAGTCAGCCAGCAT
CTTCCTCTATAGTTCCAGTGTTTGATTTTTACAGTGGCCTTCCGAAGAAACCATCTCCCTTTTTACAGCAGACAGTTGCTAGATTTGAAAAGTATTTGGG
TGAATGCAGCCAGTGGATTGAAGAATTAGAGCAACTGCTCCTCTTAGATTCTGAGAGGAACTCTTCCCACCCTGGATCCTCATTATTGCAGTCTCTGCCA
AAAGTCATGTCAAATGTGCATGATTTTTTTGTTCATGTGGCTGCTAAGGTGGAGAGCATTCATCAATACATCGAATCCATGAAAACAGCCTATCTTGTTG
ACCAGCGTCGTCGAGGGGATGGGAATGATCCATTCCTTGAGGCTGATCGACGTGAAAGAGCAAGAAAAGAAGCTGCTGCTAAAAGGGCGCATCCAACTTT
GCATTTGCCTGCAAATTCACAGCCTTCCACACAAGGTGCTGGTTTGTTTGCAAGCTCGGCAACTTCTTCAGCATCAACTGCTCCCCAGGCATCTACAGCA
ACAGCACCAGCACCAGCATCTTCAGGAAATGCTTTCTCTCTTTTTAACACACCTTCTGTGCCATCTTCCTCCATGTCATCTTCTTTGTTCGCAACACCGA
CAACCTCTGCTCCAGTATCCACTTTGTTTGGGTCAGCTGCAACTCCCTCTTTATTTGGCAGTGCTACTCAAGCTTTTGGCGCTTCTTCATCAGCACCAGC
TCTTGGCTCTGCTTCAACTCCCTCTTTGTTTGGCAGTACCACTCCAGCTTTCGGTACGGTGGCAGGATCTGGCGCTAGCTTCGGACCTACATCTAAACCA
TCAAGACCAAAATATCGAACTGTCCGTCGCTAA
AA sequence
>Potri.007G036600.4 pacid=42766600 polypeptide=Potri.007G036600.4.p locus=Potri.007G036600 ID=Potri.007G036600.4.v4.1 annot-version=v4.1
MAFSFSTPPQQTPSLFQPQPQPFQQSSPLFPQQQQQQQPQQQFQQQQQQFQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLYLFTNDKAPASYSTKW
EDLHPDSQKTLLQIEERILEYRDESKRLDQCSRLYDSSVSNEGFELDASQIIQAYLQELGGISTSMERQKALLQELMTNVKDMLRNTEMAVRSFMMLHPR
FLHSNAGGGASNATAPSQPPGTTGIPGSTSQPASSSIVPVFDFYSGLPKKPSPFLQQTVARFEKYLGECSQWIEELEQLLLLDSERNSSHPGSSLLQSLP
KVMSNVHDFFVHVAAKVESIHQYIESMKTAYLVDQRRRGDGNDPFLEADRRERARKEAAAKRAHPTLHLPANSQPSTQGAGLFASSATSSASTAPQASTA
TAPAPASSGNAFSLFNTPSVPSSSMSSSLFATPTTSAPVSTLFGSAATPSLFGSATQAFGASSSAPALGSASTPSLFGSTTPAFGTVAGSGASFGPTSKP
SRPKYRTVRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G37130 hydroxyproline-rich glycoprote... Potri.007G036600
[exp]
0 1
AT5G53620 unknown protein Potri.015G006700
[exp]
1.00 0.8720
AT3G04820 Pseudouridine synthase family ... Potri.005G051400
[exp]
1.41 0.8518
AT5G63550 DEK domain-containing chromati... Potri.015G100700
[exp]
3.87 0.8007
AT5G51660 CPSF160, ATCPSF... cleavage and polyadenylation s... Potri.012G022700
[exp]
5.19 0.7882
AT5G63960 EMB2780 DNA binding;nucleotide binding... Potri.005G065800
[exp]
5.65 0.7720
AT5G63630 P-loop containing nucleoside t... Potri.002G169800
[exp]
6.63 0.8245
AT3G16810 APUM24 pumilio 24 (.1) Potri.008G211400
[exp]
10.09 0.7978
AT2G34730 myosin heavy chain-related (.1... Potri.001G466800
[exp]
10.24 0.7970
AT1G34320 Protein of unknown function (D... Potri.019G085900
[exp]
12.00 0.7887
AT5G57820 zinc ion binding (.1) Potri.001G042000
[exp]
12.24 0.7725

Potri.007G036600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.