Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23560 230 / 2e-74 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT2G23610 229 / 7e-74 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT2G23620 223 / 1e-71 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT4G37150 221 / 6e-71 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1) AT2G23600 218 / 1e-69 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT3G50440 218 / 4e-69 ATMES10 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) AT2G23550 211 / 4e-67 ATMES6, ABE1 ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, methyl esterase 6 (.1.2) AT2G23580 208 / 6e-66 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT2G23590 197 / 2e-61 ATMES8 methyl esterase 8 (.1) AT4G09900 180 / 7e-54 ATMES12 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036700 [exp] 375 / 1e-131 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.009G107500 [exp] 297 / 2e-100 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.009G107200 [exp] 291 / 6e-98 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G037700 [exp] 250 / 4e-82 AT2G23620 300 / 6e-103 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037300 [exp] 244 / 9e-80 AT2G23620 289 / 2e-98 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133700 [exp] 225 / 3e-72 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133800 [exp] 224 / 3e-72 AT2G23620 270 / 7e-91 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133600 [exp] 223 / 1e-71 AT2G23620 274 / 8e-93 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037033 [exp] 212 / 2e-67 AT2G23620 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009203 [exp] 303 / 3e-102 AT2G23620 205 / 6e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10005402 [exp] 297 / 3e-100 AT2G23580 204 / 3e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10005400 [exp] 294 / 1e-99 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Lus10015532 [exp] 289 / 2e-97 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10022467 [exp] 285 / 4e-96 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10009205 [exp] 278 / 3e-93 AT2G23580 194 / 3e-61 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10005401 [exp] 262 / 1e-85 AT2G23600 184 / 5e-56 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10023326 [exp] 229 / 3e-74 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10038592 [exp] 207 / 4e-65 AT2G23620 306 / 4e-105 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10003511 [exp] 182 / 2e-54 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12146 [poplar] [flax] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Potri.007G036800.1 pacid=42766260 polypeptide=Potri.007G036800.1.p locus=Potri.007G036800 ID=Potri.007G036800.1.v4.1 annot-version=v4.1 ATGGCTGGCATTAACCTGCCCCGTTTCTCTCTCTCACCAAAGTCAGGATCAAAATCAAGAATAGAAATGCTCTTCAATTCTCTGTCTCCTTCAGTGAAAC CAATCTTGTATCCTCTGGAAATATGCAACAGACAAGATAGACTTTTCTTGTTCCCAAAACCTGCTACCCCATCACAAAAACTTCTTTCCACAGGAGTGTC TCCTATAGCTTGCGCAAAACTGCCTAGTAATTTTAAAACACAGAGGCATTTTGTGTTAGTCCATGGAGCCTGCCATGGAGCATGGTGTTGGTATAAAGTA TCGGCTCAGCTAAAATCTGCAGGTCATAATGTTACAGCTTTGGACATGGCTGCATCAGGGGTACATCCAAAGCAAGTTCATGAGCTCCATTCATTTGAGG ACTATTTTGAGCCCTTGATGGAATTCATGGAGTCTTTGCCACCAGAGGAGAGGGTGGTTCTAGTGGGACACAGCATGAGTGGGATATGCATTTCTGTTGC TATGGAAAGGTTTCCAGAGAAAATTTCAGCTGCTGTTTTTGCTGCAGCTGTTATGCCTGGTCCTGACTTAAGCTTCAAAGCAATAGCAGAGAAGTCTTCT CAAACATCAGTGTCCTACATGGATACACAATATGTGTTTGGTAATGGCCCTGGCAACCCTCCAACTGCCGTAGTCCTTGGTCCCAACTACATGGCCTCCA GGTTCTACCACCTTTCCCCACCTGAGGATTTGACGCTAGCTACATTGTTGGTTAGACCTTTCCCTATCTACAGTAGTTTAGAAACTGAAAAGGCTGTAAT TGTCACCAAGGAGAAATATGGATCTGTTCGTCGACTTTACATAGTATGTGACCAAGAAAAAGATCCTAGGCAAACATGGATGATTGAAAACAATCCCGTG GATGAAGTGATGGTCATCTCTGGTTCTGATCACATGGCCATGTTTTCTAAACCACAAGAGCTCTGCTCTTGTCTCCTGGAGATTGGCGATAAATACTTGT AA
AA sequence Show only first row Show all	>Potri.007G036800.1 pacid=42766260 polypeptide=Potri.007G036800.1.p locus=Potri.007G036800 ID=Potri.007G036800.1.v4.1 annot-version=v4.1 MAGINLPRFSLSPKSGSKSRIEMLFNSLSPSVKPILYPLEICNRQDRLFLFPKPATPSQKLLSTGVSPIACAKLPSNFKTQRHFVLVHGACHGAWCWYKV SAQLKSAGHNVTALDMAASGVHPKQVHELHSFEDYFEPLMEFMESLPPEERVVLVGHSMSGICISVAMERFPEKISAAVFAAAVMPGPDLSFKAIAEKSS QTSVSYMDTQYVFGNGPGNPPTAVVLGPNYMASRFYHLSPPEDLTLATLLVRPFPIYSSLETEKAVIVTKEKYGSVRRLYIVCDQEKDPRQTWMIENNPV DEVMVISGSDHMAMFSKPQELCSCLLEIGDKYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23560		ATMES7	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G036800 [exp]	0	1
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.008G172100 [exp]	1.41	0.9857	RNP1.2
AT1G14030			Rubisco methyltransferase fami...		Potri.008G090500 [exp]	1.41	0.9847	RBCMT.1
AT5G52970			thylakoid lumen 15.0 kDa prote...		Potri.016G092300 [exp]	2.00	0.9787
AT2G01755			unknown protein		Potri.008G135400 [exp]	4.69	0.9671
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Potri.005G254900 [exp]	6.32	0.9784
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.006G005500 [exp]	7.07	0.9728
AT5G52030			TraB family protein (.1.2)		Potri.012G133900 [exp]	7.21	0.9713
AT4G38160		PDE191	pigment defective 191, Mitocho...		Potri.004G209400 [exp]	8.60	0.9619
AT4G29060		EMB2726	embryo defective 2726, elongat...		Potri.018G083900 [exp]	9.16	0.9767
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Potri.009G122300 [exp]	11.66	0.9554

Compare expression of checked genes

Potri.007G036800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.