Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23620 160 / 5e-49 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT2G23600 150 / 3e-45 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT2G23610 147 / 2e-44 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT2G23580 140 / 2e-41 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT2G23590 139 / 9e-41 ATMES8 methyl esterase 8 (.1) AT5G10300 130 / 8e-38 AtHNL, HNL, ATMES5 HYDROXYNITRILE LYASE, ARABIDOPSIS THALIANA METHYL ESTERASE 5, methyl esterase 5 (.1) AT4G37150 129 / 4e-37 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1) AT2G23560 127 / 1e-36 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT2G23570 126 / 3e-36 ATMES19 ARABIDOPSIS THALIANA METHYL ESTERASE 19, methyl esterase 19 (.1) AT2G23550 126 / 3e-36 ATMES6, ABE1 ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, methyl esterase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G037033 [exp] 382 / 6e-137 AT2G23620 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037200 [exp] 382 / 6e-137 AT2G23620 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037100 [exp] 380 / 4e-136 AT2G23620 235 / 1e-77 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037000 [exp] 379 / 1e-135 AT2G23620 236 / 7e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.011G082400 [exp] 257 / 1e-87 AT2G23590 254 / 4e-85 methyl esterase 8 (.1) Potri.005G133900 [exp] 255 / 6e-87 AT2G23620 251 / 3e-84 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133600 [exp] 238 / 6e-80 AT2G23620 274 / 8e-93 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133700 [exp] 238 / 6e-80 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133800 [exp] 238 / 6e-80 AT2G23620 270 / 7e-91 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038592 [exp] 149 / 1e-44 AT2G23620 306 / 4e-105 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10022467 [exp] 132 / 3e-38 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10023326 [exp] 125 / 2e-35 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10015532 [exp] 121 / 7e-34 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10005402 [exp] 91 / 3e-22 AT2G23580 204 / 3e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10009205 [exp] 90 / 6e-22 AT2G23580 194 / 3e-61 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10000841 [exp] 88 / 6e-22 AT2G23570 129 / 1e-37 ARABIDOPSIS THALIANA METHYL ESTERASE 19, methyl esterase 19 (.1) Lus10009203 [exp] 88 / 9e-21 AT2G23620 205 / 6e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10005298 [exp] 87 / 2e-20 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10005400 [exp] 84 / 1e-19 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.007G037066.1 pacid=42766447 polypeptide=Potri.007G037066.1.p locus=Potri.007G037066 ID=Potri.007G037066.1.v4.1 annot-version=v4.1 ATGGCCAACTTAGCTGAAAATGAAAAGGTTGTATTGGTGGGTCATAGTCTAGGTGGCTTAAACGTGGCTTTTGCTATGGAGAAGTTCCCAGAGAAGATTT CTCTAGCTGTTTTTGTTACAGCATTCTTGCCTGATACCGAGCACCGGCCATCGTATATGTTAGAGAAGTTTATTGAAAATAGCCCAGCCGTGGCAGACGG GTGGCAGAGTGTAGTGTCTTCAACCGCGGGATATGAGACATTCATGAAGTCCACTGCTTTTAACCTTGCCTCCCCTGAGGATCTCAGTCTCCAAACGCTT TTAAAGAGATCAGGATCATTGTTTCTTGAAAGTCTGGCCAAGGCAAACAAGTTCACGAAGGAGAAATTTGGATCGGTTGTGCGAGATTATGTTGTTTGTA CTCAAGATTTATTGGTGGTTCCGTCATTGCAGCGCTTCATGATTGAACACAATGAGGTTAAGGAAGTGATGGAGATTCCAGCAGATCATATGGCAATTGC TTCTAGGCCTAAAGAACTCTGTCAATGTCTTCTGGAGTTCGCACGTAAGCATGCATAG
AA sequence Show only first row Show all	>Potri.007G037066.1 pacid=42766447 polypeptide=Potri.007G037066.1.p locus=Potri.007G037066 ID=Potri.007G037066.1.v4.1 annot-version=v4.1 MANLAENEKVVLVGHSLGGLNVAFAMEKFPEKISLAVFVTAFLPDTEHRPSYMLEKFIENSPAVADGWQSVVSSTAGYETFMKSTAFNLASPEDLSLQTL LKRSGSLFLESLAKANKFTKEKFGSVVRDYVVCTQDLLVVPSLQRFMIEHNEVKEVMEIPADHMAIASRPKELCQCLLEFARKHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037066 [exp]	0	1
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037033 [exp]	1.00	0.9995
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037100 [exp]	3.74	0.9976
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223708 [exp]	5.19	0.9990
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223700 [exp]	5.91	0.9987
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223704 [exp]	6.32	0.9989
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223720 [exp]	7.07	0.9989
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223800 [exp]	8.48	0.9985
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223716 [exp]	9.38	0.9985
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223724 [exp]	11.00	0.9983
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Potri.005G064400 [exp]	11.61	0.9974

Compare expression of checked genes

Potri.007G037066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.