Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23620 289 / 2e-98 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT2G23610 265 / 1e-88 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT2G23580 263 / 3e-88 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT2G23550 256 / 2e-85 ATMES6, ABE1 ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, methyl esterase 6 (.1.2) AT5G10300 255 / 5e-85 AtHNL, HNL, ATMES5 HYDROXYNITRILE LYASE, ARABIDOPSIS THALIANA METHYL ESTERASE 5, methyl esterase 5 (.1) AT2G23600 253 / 6e-84 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT2G23590 249 / 1e-82 ATMES8 methyl esterase 8 (.1) AT4G37150 243 / 2e-80 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1) AT2G23560 243 / 5e-80 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT3G50440 201 / 2e-63 ATMES10 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G037700 [exp] 516 / 0 AT2G23620 300 / 6e-103 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133700 [exp] 260 / 5e-87 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133600 [exp] 260 / 7e-87 AT2G23620 274 / 8e-93 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133800 [exp] 256 / 2e-85 AT2G23620 270 / 7e-91 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037200 [exp] 243 / 2e-80 AT2G23620 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037033 [exp] 243 / 2e-80 AT2G23620 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037000 [exp] 241 / 1e-79 AT2G23620 236 / 7e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037100 [exp] 241 / 2e-79 AT2G23620 235 / 1e-77 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.011G082400 [exp] 238 / 2e-78 AT2G23590 254 / 4e-85 methyl esterase 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038592 [exp] 295 / 1e-100 AT2G23620 306 / 4e-105 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10022467 [exp] 216 / 1e-69 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10015532 [exp] 216 / 2e-69 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10023326 [exp] 200 / 2e-63 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10009203 [exp] 188 / 5e-58 AT2G23620 205 / 6e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10005402 [exp] 184 / 1e-56 AT2G23580 204 / 3e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10005400 [exp] 179 / 6e-55 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Lus10009205 [exp] 162 / 2e-48 AT2G23580 194 / 3e-61 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10005401 [exp] 151 / 2e-43 AT2G23600 184 / 5e-56 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10030707 [exp] 151 / 8e-43 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.007G037300.2 pacid=42765074 polypeptide=Potri.007G037300.2.p locus=Potri.007G037300 ID=Potri.007G037300.2.v4.1 annot-version=v4.1 ATGGTGCATCTCTCCACCCTATATACTGGGATGCAGGTGCTTACCCGCATCAAAACAACAATGGTAGAGACCAAGAATCAGGAGCATTTTGTTCTAGTAC ATGGAGCTTGCCATGGGGCTTGGTGCTGGCAAAAGTTCAAAACGCTGCTTGAGTCAGCAAGTAACAGGGTCACGTTGCTTGACCTTGCTGCTTCAGGCGC CAACATGAAGGCAATCCAAGATGTAGAAACACTTGATGAATATACGGAGCCTTTGTTAGAGTTTCTGGCCTCATTACAACCGAAGGAGAAGGTTATTCTA GTAGGGCACAGCCTAGGAGGTTTGAGTTTGGCTCTTGCTATGGAAAAGTTCCCAGAGAAGATTGCTGTTGCTGTTTTCTTATCAGCTTTCATGCCAGATA CCACACACAAGCCATCATTTGTCTTGGATCAGTTTAACGAGAGGACCCCGGCGGATTACTGGTTGGACACTCAATTTTTACCATACAGCAGCTCTCAATG TCATCTCACAACAATAGTTTTTGGACCCAAATTCTTATCCTCCAAGCTCTATCAGCTAAGCCCACCTGAGGATCTTGAGCAAGCAAAAACTTTGGTAAGG CCAGGATCAATGTTTCTGGATGATTTGTCAAAGGCAAACAGTTTCTCCACGACGGGCTATGGGTCAGTCAAACGAGTATATGTTATCTTTGACAAAGATT TAGCGATACCAGTAGAGTTTCAACGCTGGATGATTGAAAACAGTGCTGTTGAAGAAGTTATGGAAATTGAAGGTGCAGACCATATGGTTATGTTCAGCAA GCCACAAGAACTCTTCCATTGTCTCTCAGAGATAGCAAATAAACATGCTTAA
AA sequence Show only first row Show all	>Potri.007G037300.2 pacid=42765074 polypeptide=Potri.007G037300.2.p locus=Potri.007G037300 ID=Potri.007G037300.2.v4.1 annot-version=v4.1 MVHLSTLYTGMQVLTRIKTTMVETKNQEHFVLVHGACHGAWCWQKFKTLLESASNRVTLLDLAASGANMKAIQDVETLDEYTEPLLEFLASLQPKEKVIL VGHSLGGLSLALAMEKFPEKIAVAVFLSAFMPDTTHKPSFVLDQFNERTPADYWLDTQFLPYSSSQCHLTTIVFGPKFLSSKLYQLSPPEDLEQAKTLVR PGSMFLDDLSKANSFSTTGYGSVKRVYVIFDKDLAIPVEFQRWMIENSAVEEVMEIEGADHMVMFSKPQELFHCLSEIANKHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037300 [exp]	0	1
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054900 [exp]	1.73	0.9728	HSP70.7
AT3G14470			NB-ARC domain-containing disea...		Potri.017G121500 [exp]	3.46	0.9553
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036600 [exp]	3.46	0.9575
					Potri.015G025600 [exp]	3.87	0.9275
AT4G13830		J20	DNAJ-like 20 (.1.2)		Potri.007G088900 [exp]	3.87	0.9539
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.007G002400 [exp]	4.89	0.9475
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283866 [exp]	5.91	0.9355
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.014G180500 [exp]	6.63	0.9313
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283208 [exp]	7.07	0.9323
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Potri.006G054700 [exp]	7.74	0.9102

Compare expression of checked genes

Potri.007G037300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.