Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50470 76 / 4e-17 MLA10, HR3 INTRACELLULAR MILDEW A 10, homolog of RPW8 3 (.1) AT3G50450 67 / 5e-14 HR1 homolog of RPW8 1 (.1) AT3G50460 64 / 1e-12 HR2 homolog of RPW8 2 (.1) AT5G66630 50 / 2e-07 DAR5 DA1-related protein 5 (.1) AT5G66910 45 / 1e-05 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G039000 [exp] 48 / 2e-06 AT5G66900 343 / 2e-107 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039100 [exp] 45 / 1e-05 AT5G66900 474 / 3e-156 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038800 [exp] 41 / 6e-05 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009328 [exp] 77 / 4e-17 AT3G50470 79 / 4e-18 INTRACELLULAR MILDEW A 10, homolog of RPW8 3 (.1) Lus10007359 [exp] 62 / 3e-11 AT5G66900 473 / 3e-154 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10009329 [exp] 53 / 9e-09 AT5G66630 42 / 2e-04 DA1-related protein 5 (.1) Lus10000836 [exp] 51 / 7e-08 AT3G50470 52 / 2e-08 INTRACELLULAR MILDEW A 10, homolog of RPW8 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05659 [poplar] [flax] RPW8 Arabidopsis broad-spectrum mildew resistance protein RPW8
Representative CDS sequence Show only first row Show all	>Potri.007G038600.1 pacid=42765437 polypeptide=Potri.007G038600.1.p locus=Potri.007G038600 ID=Potri.007G038600.1.v4.1 annot-version=v4.1 ATGGAACCAATATCACAGCTTGTTTCAGGGGCTGCTTTGGGAGTTGCCCTTCAACTGCTAAGTGATTCGATTATGCGTGCAGTAACTACAGCCTCCAGCT TCAAATTTAAGCTACGGCTTCTCCAGGCAACCGTCAGGATCTTGATCACAAGATTCAAAGTTATCAGAGAAGAACAACAGCAGTTTCCAGGAGCAGAAGC TCAGAGATTGTGTGAATTGTTGGCGAGAGGGAGTCATCTTATTTCTAAATGCTCAAGAATCTCACAATGGAATTATTTCAAGATGAGAAGATACGAGAAA AGAATTGATGAGCTTGATGAATCTCTCAAACATCTTTTAACGTTGAATTTTCAGCTTTTGCAATATGAGAACATGCGGAAACTTTTGACAGGGGTTAATG AAATGAGTAAGAAATTGGTGGATCATGGAGATGAGTTGCCCAAGCCTAGCCATGTCGTACCTTTAAACGATCAAGAAAACTCGTGGTACTCTCGGACTTC AAGCCACAGACAGCCATCAAAACCAAGATTTAGAATGAGTTATCAAAGAAGCGAAAAGATTACCAAGTTTGGGTTTAGTTTCTGA
AA sequence Show only first row Show all	>Potri.007G038600.1 pacid=42765437 polypeptide=Potri.007G038600.1.p locus=Potri.007G038600 ID=Potri.007G038600.1.v4.1 annot-version=v4.1 MEPISQLVSGAALGVALQLLSDSIMRAVTTASSFKFKLRLLQATVRILITRFKVIREEQQQFPGAEAQRLCELLARGSHLISKCSRISQWNYFKMRRYEK RIDELDESLKHLLTLNFQLLQYENMRKLLTGVNEMSKKLVDHGDELPKPSHVVPLNDQENSWYSRTSSHRQPSKPRFRMSYQRSEKITKFGFSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50470		MLA10, HR3	INTRACELLULAR MILDEW A 10, hom...		Potri.007G038600 [exp]	0	1
AT4G23260		CRK18	cysteine-rich RLK (RECEPTOR-li...		Potri.005G014950 [exp]	3.74	0.8585
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Potri.005G187600 [exp]	13.41	0.8326
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.012G120676 [exp]	13.85	0.8515
AT4G34950			Major facilitator superfamily ...		Potri.005G112400 [exp]	14.07	0.8297
AT2G39510			nodulin MtN21 /EamA-like trans...		Potri.008G051500 [exp]	14.14	0.8554
AT1G52190			Major facilitator superfamily ...		Potri.018G041500 [exp]	24.28	0.8143
AT1G52190			Major facilitator superfamily ...		Potri.018G041600 [exp]	26.38	0.8232
AT1G52190			Major facilitator superfamily ...		Potri.018G040500 [exp]	30.74	0.7937
AT1G65820			microsomal glutathione s-trans...		Potri.017G140900 [exp]	31.40	0.7885
AT1G52190			Major facilitator superfamily ...		Potri.018G041400 [exp]	31.49	0.7906

Compare expression of checked genes

Potri.007G038600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.